Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G10290 842 / 0 leucine-rich repeat transmembrane protein kinase family protein (.1) AT5G65240 800 / 0 Leucine-rich repeat protein kinase family protein (.1.2) AT5G63710 580 / 0 Leucine-rich repeat protein kinase family protein (.1) AT4G33430 548 / 0 SERK3, RKS10, ELG, BAK1, ATSERK3, ATBAK1 RECEPTOR KINASES LIKE SERK 10, ELONGATED, SOMATIC EMBRYOGENESIS RECEPTOR-LIKE KINASE 3, BRI1-associated receptor kinase (.1.2) AT2G13790 512 / 7e-176 BAK7, BKK1, ATSERK4 BAK1-LIKE 1, BRI1- ASSOCIATED KINASE 7, somatic embryogenesis receptor-like kinase 4 (.1) AT3G25560 511 / 4e-175 NIK2 NSP-interacting kinase 2 (.1.2.3) AT5G16000 499 / 3e-170 NIK1 NSP-interacting kinase 1 (.1) AT2G13800 478 / 7e-163 BAK8, ATSERK5 BRI1- ASSOCIATED KINASE 8, SOMATIC EMBRYOGENESIS RECEPTOR LIKE KINASE 5, somatic embryogenesis receptor-like kinase 5 (.1) AT2G23950 478 / 2e-162 Leucine-rich repeat protein kinase family protein (.1) AT1G71830 474 / 8e-161 ATSERK1, SERK1 somatic embryogenesis receptor-like kinase 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023146 [exp] 751 / 0 AT5G10290 680 / 0.0 leucine-rich repeat transmembrane protein kinase family protein (.1) Lus10020962 [exp] 548 / 0 AT4G33430 989 / 0.0 RECEPTOR KINASES LIKE SERK 10, ELONGATED, SOMATIC EMBRYOGENESIS RECEPTOR-LIKE KINASE 3, BRI1-associated receptor kinase (.1.2) Lus10030898 [exp] 530 / 0 AT1G60800 931 / 0.0 NSP-interacting kinase 3 (.1) Lus10030591 [exp] 527 / 0 AT1G60800 929 / 0.0 NSP-interacting kinase 3 (.1) Lus10019145 [exp] 507 / 1e-173 AT5G16000 935 / 0.0 NSP-interacting kinase 1 (.1) Lus10034350 [exp] 506 / 3e-173 AT5G16000 1018 / 0.0 NSP-interacting kinase 1 (.1) Lus10034413 [exp] 505 / 8e-173 AT5G16000 937 / 0.0 NSP-interacting kinase 1 (.1) Lus10005103 [exp] 498 / 5e-170 AT5G16000 998 / 0.0 NSP-interacting kinase 1 (.1) Lus10019963 [exp] 480 / 3e-162 AT2G23950 907 / 0.0 Leucine-rich repeat protein kinase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G094500 [exp] 923 / 0 AT5G10290 837 / 0.0 leucine-rich repeat transmembrane protein kinase family protein (.1) Potri.005G074200 [exp] 892 / 0 AT5G10290 855 / 0.0 leucine-rich repeat transmembrane protein kinase family protein (.1) Potri.001G306000 [exp] 590 / 0 AT5G63710 791 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.019G001800 [exp] 590 / 0 AT5G63710 782 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.005G083300 [exp] 570 / 0 AT1G71830 981 / 0.0 somatic embryogenesis receptor-like kinase 1 (.1) Potri.007G082400 [exp] 565 / 0 AT1G34210 954 / 0.0 somatic embryogenesis receptor-like kinase 2 (.1) Potri.003G023000 [exp] 553 / 0 AT4G33430 961 / 0.0 RECEPTOR KINASES LIKE SERK 10, ELONGATED, SOMATIC EMBRYOGENESIS RECEPTOR-LIKE KINASE 3, BRI1-associated receptor kinase (.1.2) Potri.001G206700 [exp] 548 / 0 AT4G33430 927 / 0.0 RECEPTOR KINASES LIKE SERK 10, ELONGATED, SOMATIC EMBRYOGENESIS RECEPTOR-LIKE KINASE 3, BRI1-associated receptor kinase (.1.2) Potri.004G108200 [exp] 523 / 9e-180 AT5G16000 1006 / 0.0 NSP-interacting kinase 1 (.1) Potri.017G108000 [exp] 520 / 2e-178 AT5G16000 995 / 0.0 NSP-interacting kinase 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain CL0022 [flax] [poplar] LRR PF00560 [flax] [poplar] LRR_1 Leucine Rich Repeat CL0022 [flax] [poplar] PF08263 [flax] [poplar] LRRNT_2 Leucine rich repeat N-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10000629 pacid=23175094 polypeptide=Lus10000629 locus=Lus10000629.g ID=Lus10000629.BGIv1.0 annot-version=v1.0 ATGGAACTTCTTCTTGCAGCCTTGCTGCTGGCTGGCTTGTTCTCCTTTGCCTTTTCGGATTTGCAAGCGGATGCCCTATCCGAATTAAAGCAATCAATGA AGCCTCCAGCCGACCAATTGACTGATTGGAACCCGAGTCAAGTAAACCCGTGTACTTGGTCAAATGTAATTTGCAACGTAGACAACAATGTTATCTCAGT GACTTTGTCTGGCATAAATTGTTCAGGAACCTTATCTCCGGGAATAGGAGTCTTGAAGACTCTTACTACACTGACATTGAAAGGAAATGGAATAAGTGGC GAGATACCGAAAGAGTTTGGAAATTTGTCAAGTTTAACCAGTTTAGACTTGGAAAATAACCGTCTAACCGGTGAAATACCACCTTCCCTTGGAAATCTAA AAAAGCTTCAATTTCTCACATTGAGTCAGAACAATCTCACTGGACCTGTCCCAGATTCACTTTCAGGCCTTCAAAACTTGATCAATATTCTGCTCGATTC TAACAATCTCTCCGGCCCGATTCCAGAGCGCTTGTTCAAAGTTCCAAAATTCAATTTTACTAAAAACCACCTGAATTGTAGTCTGAATGCACCTCACCGA TGCGAATCCGATGATAGCGATTCAGGAGCTTCCCATAAGTCAAAAGTTGGAGTTATTGTTGGAGTCGTCGGAGGACTTGCAAGTATCCTCTTTGCAGGAG GCTTGATTTACTTGGTGTGCAAGTTTAGACACAGACGCTTCAAACATGAAGTCTTTGTAGATGTGGCAGGTGAAGTGGACCGACGAATTGCATTTGGTCA ATTGAAGCGATTCTCGTGGAGGGAGTTACAGCTGGCTACCGACAACTTCAACGAGAAGCATATTCTTGGACAGGGAGGTTTCGGAAAAGTCTACAAAGGA GTGCTTCCCGATGGTACGAAAATCGCTGTGAAACGTTTGACTGATTTCGAGAGTCCGGGAGGAGACGCTGCTTTCCAACGTGAAGTCGAGATGATAAGCG TAGCTGTCCATAGAAACCTGCTGAGACTGATTGGGTTTTGCACTACGCCAACCGAACGCCTGCTCGTGTATCCGTTTATGCAGAATTTGAGTGTAGCTTA TCGTCTACGAGAGCGTAAACCCGAGGAGCCTGTACTAGACTGGGAAACGAGGAAAAGAGTCGCGCTAGGTGCAGCACGGGGTTTGGAATACCTTCATGAA CACTGTAACCCGAAAATAATACATCGTGATGTGAAAGCAGCTAACGTGTTATTGGATGAGGATTACGAAGCGGTAGTTGGTGATTTCGGCCTTGCAAAGT TGGTTGATGTGAGGAAGACGAACGTTACAACGCAAGTTCGTGGAACAATGGGTCACATAGCTCCCGAATACTTATCGACAGGGAAGTCATCCGAAAGGAC GGATGTTTTCGGCTATGGAATCTTGCTTCTCGAGGTTGTAACGGGGCAACGTGCAATTGATTTCTCTCGCCTCGAAGAAGAGGACGACGTCTTGCTTCTT GATCACGTGAAGAAGCTAGAGAGGGAGAAGAGGTTGGATGCGATCGTGGACCGGAACTTGAAGAAGAACTACAACATGGCGGAAGTGGAAATGATGATCC AGGTAGCGCTACTGTGCACGCAGGCCTCACCAGAAGATCGGCCAGCAATGTCGGAGGTCGTAAGGATGCTAGAAGGCGAAGGGCTTGCGGAGAGATGGGA GGAATGGCAGCACGTTGAAGTGAATCGCAGGGAAGAGTACGAAAGGTTGCAGAGGAGGTTCGACTGGGGAGAAGATTCATTCTACAACCAAGACGCTATC GAGCTATCTGGTGCGAGATAA
AA sequence Show only first row Show all	>Lus10000629 pacid=23175094 polypeptide=Lus10000629 locus=Lus10000629.g ID=Lus10000629.BGIv1.0 annot-version=v1.0 MELLLAALLLAGLFSFAFSDLQADALSELKQSMKPPADQLTDWNPSQVNPCTWSNVICNVDNNVISVTLSGINCSGTLSPGIGVLKTLTTLTLKGNGISG EIPKEFGNLSSLTSLDLENNRLTGEIPPSLGNLKKLQFLTLSQNNLTGPVPDSLSGLQNLINILLDSNNLSGPIPERLFKVPKFNFTKNHLNCSLNAPHR CESDDSDSGASHKSKVGVIVGVVGGLASILFAGGLIYLVCKFRHRRFKHEVFVDVAGEVDRRIAFGQLKRFSWRELQLATDNFNEKHILGQGGFGKVYKG VLPDGTKIAVKRLTDFESPGGDAAFQREVEMISVAVHRNLLRLIGFCTTPTERLLVYPFMQNLSVAYRLRERKPEEPVLDWETRKRVALGAARGLEYLHE HCNPKIIHRDVKAANVLLDEDYEAVVGDFGLAKLVDVRKTNVTTQVRGTMGHIAPEYLSTGKSSERTDVFGYGILLLEVVTGQRAIDFSRLEEEDDVLLL DHVKKLEREKRLDAIVDRNLKKNYNMAEVEMMIQVALLCTQASPEDRPAMSEVVRMLEGEGLAERWEEWQHVEVNRREEYERLQRRFDWGEDSFYNQDAI ELSGAR

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G10290			leucine-rich repeat transmembr...		Lus10000629 [exp]	0	1
AT5G03040		IQD2	IQ-domain 2 (.1.2.3)		Lus10026486 [exp]	2.2	0.8837
AT2G42590		GENERALREGULATO...	general regulatory factor 9 (....		Lus10029835 [exp]	2.8	0.8700
AT1G10210		ATMPK1	mitogen-activated protein kina...		Lus10033197 [exp]	3.5	0.8745
AT5G22130		PNT1	PEANUT 1, mannosyltransferase ...		Lus10013349 [exp]	3.9	0.8695
AT4G01840		KCO5, ATTPK5, A...	Ca2+ activated outward rectify...		Lus10004525 [exp]	7.3	0.8640
AT4G00170			Plant VAMP (vesicle-associated...		Lus10036495 [exp]	12.3	0.8427
AT1G36730			Translation initiation factor ...		Lus10010981 [exp]	12.7	0.8361
AT1G67900			Phototropic-responsive NPH3 fa...		Lus10000443 [exp]	18.1	0.8256
AT2G42590		GENERALREGULATO...	general regulatory factor 9 (....		Lus10017650 [exp]	20.8	0.8387
AT2G30880			Pleckstrin homology (PH) domai...		Lus10029819 [exp]	21.0	0.8513

Compare expression of checked genes

Lus10000629 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.