Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G39955 385 / 4e-135 alpha/beta-Hydrolases superfamily protein (.1) AT5G09430 375 / 4e-131 alpha/beta-Hydrolases superfamily protein (.1) AT1G78210 283 / 5e-95 alpha/beta-Hydrolases superfamily protein (.1) AT5G21950 187 / 1e-57 alpha/beta-Hydrolases superfamily protein (.1) AT1G17430 166 / 6e-49 alpha/beta-Hydrolases superfamily protein (.1) AT1G72620 163 / 6e-48 alpha/beta-Hydrolases superfamily protein (.1) AT2G18360 162 / 1e-47 alpha/beta-Hydrolases superfamily protein (.1) AT4G33180 156 / 1e-45 alpha/beta-Hydrolases superfamily protein (.1) AT4G36610 137 / 2e-38 alpha/beta-Hydrolases superfamily protein (.1) AT4G36530 58 / 2e-09 alpha/beta-Hydrolases superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023147 [exp] 590 / 0 AT4G39955 414 / 3e-146 alpha/beta-Hydrolases superfamily protein (.1) Lus10020926 [exp] 301 / 6e-102 AT1G78210 358 / 3e-124 alpha/beta-Hydrolases superfamily protein (.1) Lus10036159 [exp] 222 / 3e-72 AT5G09430 308 / 3e-106 alpha/beta-Hydrolases superfamily protein (.1) Lus10019631 [exp] 191 / 1e-58 AT1G72620 270 / 3e-89 alpha/beta-Hydrolases superfamily protein (.1) Lus10038076 [exp] 179 / 3e-54 AT4G33180 333 / 8e-115 alpha/beta-Hydrolases superfamily protein (.1) Lus10012409 [exp] 176 / 7e-53 AT1G17430 259 / 1e-84 alpha/beta-Hydrolases superfamily protein (.1) Lus10022106 [exp] 158 / 3e-46 AT1G72620 264 / 4e-87 alpha/beta-Hydrolases superfamily protein (.1) Lus10041747 [exp] 134 / 9e-37 AT2G18360 436 / 1e-154 alpha/beta-Hydrolases superfamily protein (.1) Lus10025873 [exp] 113 / 3e-29 AT2G18360 243 / 2e-79 alpha/beta-Hydrolases superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G074066 [exp] 441 / 3e-157 AT4G39955 416 / 1e-146 alpha/beta-Hydrolases superfamily protein (.1) Potri.007G094700 [exp] 432 / 1e-153 AT4G39955 400 / 1e-140 alpha/beta-Hydrolases superfamily protein (.1) Potri.001G313100 [exp] 383 / 4e-134 AT5G09430 466 / 7e-167 alpha/beta-Hydrolases superfamily protein (.1) Potri.002G097400 [exp] 366 / 1e-127 AT1G78210 407 / 1e-143 alpha/beta-Hydrolases superfamily protein (.1) Potri.006G219400 [exp] 196 / 3e-61 AT4G33180 329 / 3e-113 alpha/beta-Hydrolases superfamily protein (.1) Potri.001G168600 [exp] 185 / 2e-56 AT1G17430 282 / 1e-93 alpha/beta-Hydrolases superfamily protein (.1) Potri.004G155700 [exp] 150 / 2e-43 AT2G18360 317 / 4e-108 alpha/beta-Hydrolases superfamily protein (.1) Potri.005G122600 [exp] 147 / 5e-42 AT2G18360 444 / 5e-158 alpha/beta-Hydrolases superfamily protein (.1) Potri.004G155800 [exp] 144 / 9e-41 AT2G18360 340 / 3e-117 alpha/beta-Hydrolases superfamily protein (.1) Potri.009G116900 [exp] 138 / 1e-38 AT2G18360 324 / 3e-111 alpha/beta-Hydrolases superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0028 [flax] [poplar] AB_hydrolase PF00561 [flax] [poplar] Abhydrolase_1 alpha/beta hydrolase fold CL0028 [flax] [poplar] AB_hydrolase PF08386 [flax] [poplar] Abhydrolase_4 TAP-like protein
Representative CDS sequence Show only first row Show all	>Lus10000630 pacid=23175100 polypeptide=Lus10000630 locus=Lus10000630.g ID=Lus10000630.BGIv1.0 annot-version=v1.0 ATGGCGAAATGCTTCAGCTACACAGCAACCCAAGACTCCTGCTTCCGCTACTCCTTCTCCAGAGCCGGCCTGAAATCCTCCACCACCGATCTCGGCGACG GCGGCACAATCATGCACTGCTGGGCCCCCAAATCCCCCTCCAAATCGAAGCCCAACCTGGTCCTGATCCACGGATTCGGCGCCAACGCAATGTGGCAGTT CAACGACTTCATCTCCCCTCTGAAATCCAAGTTCAATCTCTACATCCCGGACCTCCTCTTCTTCGGCGACTCCCACACGACCCGACCTGACCGGTCGGAA TCCTTCCAGGCCCGCTGTGTCGCCTCCCTCATGGCGGCCCACGGCGTGCTACGGATGGACCTGATGGGGCTCAGCTACGGCGGCTTCGTGTCGTACAGCT TGGCGGCGCAGTTCCCCGAGCGCGTGGGGCGAGTGGTTCTGGGGTGCGCTGGGGTTTGTCTTGAGGAGAAAGATATGGAGGATGGGATGTTTCAGGAGAA AGGCCGGCAGTGGTTCCGGCTGTCGTTTTATAAGCCTCCGCCGCTCGCTCCTTCTTGTTTCCTCAGTGATTTCATTGAGGTAATGTGTACAGAATACCTT CAAGAAAGGAGGGAGTTGATAGAAACACTCCACAGAGATAGGAAACTGTCCTCGCTTCCCCGTATAACCCAGCCGACGCTCATAGTATGGGGAGAATACG ACCAAGTATTCCCAGTGGCATTGGCACACAGATTAAAAAGCCATATTGGGGAGAATGCAGAGCTGGTGATACTAAAGAATGCAGGACATGCACTGAATGC AGAGCGGCCTAAACAGCTCTACAAGCACATTAAGTCCTTCCTCCTTCAAACGCCTCCACCTTCGACTAAACAGCCACACGACAGCAACGGTGTCAAGACT GATTGA
AA sequence Show only first row Show all	>Lus10000630 pacid=23175100 polypeptide=Lus10000630 locus=Lus10000630.g ID=Lus10000630.BGIv1.0 annot-version=v1.0 MAKCFSYTATQDSCFRYSFSRAGLKSSTTDLGDGGTIMHCWAPKSPSKSKPNLVLIHGFGANAMWQFNDFISPLKSKFNLYIPDLLFFGDSHTTRPDRSE SFQARCVASLMAAHGVLRMDLMGLSYGGFVSYSLAAQFPERVGRVVLGCAGVCLEEKDMEDGMFQEKGRQWFRLSFYKPPPLAPSCFLSDFIEVMCTEYL QERRELIETLHRDRKLSSLPRITQPTLIVWGEYDQVFPVALAHRLKSHIGENAELVILKNAGHALNAERPKQLYKHIKSFLLQTPPPSTKQPHDSNGVKT D

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G39955			alpha/beta-Hydrolases superfam...		Lus10000630 [exp]	0	1
AT5G58600		TBL44, PMR5	TRICHOME BIREFRINGENCE-LIKE 44...		Lus10031301 [exp]	5.8	0.8694
AT1G73620			Pathogenesis-related thaumatin...		Lus10009058 [exp]	10.0	0.9046
AT5G64620		ATC/VIF2, C/VIF...	cell wall / vacuolar inhibitor...		Lus10022409 [exp]	11.1	0.8547
AT3G06270			Protein phosphatase 2C family ...		Lus10021952 [exp]	12.3	0.8511
AT4G37090			unknown protein		Lus10000742 [exp]	12.5	0.8725
AT3G45980		H2B, HTB9	HISTONE H2B, Histone superfami...		Lus10041347 [exp]	16.2	0.9041
AT3G18800			unknown protein		Lus10033505 [exp]	16.9	0.8860
AT5G59690			Histone superfamily protein (....		Lus10014264 [exp]	18.7	0.9018
AT5G45590			Ribosomal protein L35 (.1)		Lus10010406 [exp]	21.2	0.8791
AT5G65360			Histone superfamily protein (....		Lus10025439 [exp]	23.3	0.8894

Compare expression of checked genes

Lus10000630 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.