Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G22360 673 / 0 DNAJ heat shock family protein (.1) AT4G39960 643 / 0 Molecular chaperone Hsp40/DnaJ family protein (.1) AT1G80030 366 / 1e-122 Molecular chaperone Hsp40/DnaJ family protein (.1.2.3) AT3G17830 326 / 6e-107 Molecular chaperone Hsp40/DnaJ family protein (.1) AT5G48030 234 / 7e-72 GFA2 gametophytic factor 2 (.1) AT1G28210 192 / 2e-56 ATJ1 DNAJ heat shock family protein (.1.2) AT5G22060 151 / 4e-41 ATJ2 ARABIDOPSIS THALIANA DNAJ HOMOLOGUE 2, DNAJ homologue 2 (.1) AT3G44110 140 / 6e-37 ATJ3 DNAJ homologue 3 (.1.2) AT3G62600 122 / 5e-31 ATERDJ3B DNAJ heat shock family protein (.1) AT4G28480 90 / 6e-20 DNAJ heat shock family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023148 [exp] 853 / 0 AT2G22360 675 / 0.0 DNAJ heat shock family protein (.1) Lus10035920 [exp] 706 / 0 AT2G22360 619 / 0.0 DNAJ heat shock family protein (.1) Lus10025742 [exp] 525 / 0 AT2G22360 504 / 4e-179 DNAJ heat shock family protein (.1) Lus10023122 [exp] 380 / 3e-128 AT1G80030 636 / 0.0 Molecular chaperone Hsp40/DnaJ family protein (.1.2.3) Lus10011484 [exp] 379 / 1e-127 AT1G80030 638 / 0.0 Molecular chaperone Hsp40/DnaJ family protein (.1.2.3) Lus10031336 [exp] 284 / 1e-90 AT3G17830 459 / 5e-158 Molecular chaperone Hsp40/DnaJ family protein (.1) Lus10031908 [exp] 281 / 2e-89 AT3G17830 457 / 3e-157 Molecular chaperone Hsp40/DnaJ family protein (.1) Lus10027634 [exp] 235 / 1e-72 AT5G48030 494 / 8e-174 gametophytic factor 2 (.1) Lus10035855 [exp] 230 / 1e-70 AT5G48030 524 / 0.0 gametophytic factor 2 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G094900 [exp] 739 / 0 AT2G22360 688 / 0.0 DNAJ heat shock family protein (.1) Potri.005G073900 [exp] 734 / 0 AT2G22360 659 / 0.0 DNAJ heat shock family protein (.1) Potri.003G031800 [exp] 375 / 3e-126 AT1G80030 607 / 0.0 Molecular chaperone Hsp40/DnaJ family protein (.1.2.3) Potri.015G035300 [exp] 297 / 2e-95 AT3G17830 504 / 4e-175 Molecular chaperone Hsp40/DnaJ family protein (.1) Potri.001G271300 [exp] 242 / 2e-75 AT5G48030 530 / 0.0 gametophytic factor 2 (.1) Potri.009G065500 [exp] 241 / 6e-75 AT5G48030 504 / 1e-177 gametophytic factor 2 (.1) Potri.005G160200 [exp] 206 / 4e-61 AT1G28210 478 / 3e-167 DNAJ heat shock family protein (.1.2) Potri.009G015700 [exp] 160 / 2e-44 AT3G44110 629 / 0.0 DNAJ homologue 3 (.1.2) Potri.008G018800 [exp] 159 / 7e-44 AT3G44110 528 / 0.0 DNAJ homologue 3 (.1.2) Potri.010G243100 [exp] 150 / 9e-41 AT3G44110 528 / 0.0 DNAJ homologue 3 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00684 [flax] [poplar] DnaJ_CXXCXGXG DnaJ central domain CL0392 [flax] [poplar] Chaperone-J PF00226 [flax] [poplar] DnaJ DnaJ domain CL0392 [flax] [poplar] PF01556 [flax] [poplar] DnaJ_C DnaJ C terminal domain
Representative CDS sequence Show only first row Show all	>Lus10000631 pacid=23175097 polypeptide=Lus10000631 locus=Lus10000631.g ID=Lus10000631.BGIv1.0 annot-version=v1.0 ATGGCCATTATTCCTTGTGGAAGTACATCCCTTTCTCAATGGGGTATACATCCTCAGATTGTGCCAAGGTCATACATGTCAAACAGAGTAGTCATGTGCC AGTATAGCCTTGACAACAGGGCGCGCTACTTGGCAGCTCCCAGTTCAAGCTTCTTTTCACGGGATTCCTTGCCTATGATGTCTGCTATCGGACATTCCAG GACTTCGAACCGTCAGAGGGGTGCACGGCTTACAGTTAGAGCAGATGCTGACTACTATTCTGTGCTGGGAGTGTCAAAAAATGCAGCTAAATCTGACATT AAAAGTGCTTATAGGAAGCTTGCAAGGAGCTATCACCCAGATGTGAACAAAGATCCCGGTGCAGAGCAGAAATTCAAGGAAATAAGCAATGCATATGAGG TCTTGTCTGATGATGAGAAGCGATCATTATATGACCGATATGGCGAGGCTGGAGTCAAAGGTGCTGCCGGCATGGGAGCATCGGATTTCAGCAACCCGTT TGATTTGTTCGAGTCATTGTTCGATATGGGCAACATAAACATGGGCGGAATGGGAGGAGGCGGCAGGGGTTCGAGAAATCGAGCAGCTGACGGCCAGGAT GAATACTACAATCTTCTGTTGAATTTCAACGAAGCCGTGTTCGGAATCGAGAAGGAGATCGAAGTAACCCGGCTTGAAAGCTGTGGTACCTGTGACGGTT CAGGAGCGAAGCCAGGGACGAAACCAACAAAGTGCAACACATGTCGCGGGCAAGGCCAAGTCGTGACCTCGGCCAGAACTCCGCTGGGAGTGTTCCAGCA GGTGATGACGTGCAGCACTTGTGGCGGGACCGGTGAATCGTTCACTCCTTGCAACACTTGTTCAGGGGACGGGCGAGTGAGGAAGACGAAACGAATCAGC TTGAAAGTTCCGGCCGGGGTGGACTCCGGTAGCCGGCTGAGGGTTCGATCCGAGGGCAATGCGGGAAGGAGAGGTGGCTCGCCCGGGGACCTTTTTGTCA TTATTGAAGTCGTACCGGATCCTGTCCTAAAGCGTGACGATACTAGTATCTTGTACACGTGCAAGATCTCGTACGTTGATGCAATCCTGGGGACGAAAAT CAAGGTCCCGACCGTGGACGGCATGGTTGATCTGAAGATACCGGCGGGGACACAACCGAACACAACGTTGGTGATGGCGAAAAAGGGTGTGCCCGTACTG AACAAGAGCAATATGAGAGGTGATCAGCTGGTTCGGGTGCAAGTGGAGATTCCGAAACGATTAAGTAGCGATGAGAAGAAGCTTGTTGAGGAACTTGCTG ATCTAAGCAAGGGTAAAACTGCGGCTGCCCGGAGATGA
AA sequence Show only first row Show all	>Lus10000631 pacid=23175097 polypeptide=Lus10000631 locus=Lus10000631.g ID=Lus10000631.BGIv1.0 annot-version=v1.0 MAIIPCGSTSLSQWGIHPQIVPRSYMSNRVVMCQYSLDNRARYLAAPSSSFFSRDSLPMMSAIGHSRTSNRQRGARLTVRADADYYSVLGVSKNAAKSDI KSAYRKLARSYHPDVNKDPGAEQKFKEISNAYEVLSDDEKRSLYDRYGEAGVKGAAGMGASDFSNPFDLFESLFDMGNINMGGMGGGGRGSRNRAADGQD EYYNLLLNFNEAVFGIEKEIEVTRLESCGTCDGSGAKPGTKPTKCNTCRGQGQVVTSARTPLGVFQQVMTCSTCGGTGESFTPCNTCSGDGRVRKTKRIS LKVPAGVDSGSRLRVRSEGNAGRRGGSPGDLFVIIEVVPDPVLKRDDTSILYTCKISYVDAILGTKIKVPTVDGMVDLKIPAGTQPNTTLVMAKKGVPVL NKSNMRGDQLVRVQVEIPKRLSSDEKKLVEELADLSKGKTAAARR

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G22360			DNAJ heat shock family protein...		Lus10000631 [exp]	0	1
AT5G17710		EMB1241	embryo defective 1241, Co-chap...		Lus10028034 [exp]	1.0	0.8940
AT2G22360			DNAJ heat shock family protein...		Lus10023148 [exp]	2.0	0.8670
AT3G02660		EMB2768	EMBRYO DEFECTIVE 2768, Tyrosyl...		Lus10038795 [exp]	3.5	0.8561
AT2G44870			unknown protein		Lus10020395 [exp]	3.5	0.8307
AT5G16710		DHAR3	dehydroascorbate reductase 1 (...		Lus10009135 [exp]	6.5	0.8660
AT5G66520			Tetratricopeptide repeat (TPR)...		Lus10031423 [exp]	7.0	0.8304
AT2G15690			Tetratricopeptide repeat (TPR)...		Lus10008570 [exp]	8.7	0.8549
AT4G22220		ATISU1, ISU1	SufE/NifU family protein (.1)		Lus10042112 [exp]	9.5	0.8049
AT3G22150			Tetratricopeptide repeat (TPR)...		Lus10003806 [exp]	10.2	0.7862
AT3G12120		FAD2	fatty acid desaturase 2 (.1.2)		Lus10004175 [exp]	11.0	0.8183

Compare expression of checked genes

Lus10000631 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.