Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G39970 427 / 1e-151 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) AT3G48420 171 / 7e-51 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) AT1G56500 84 / 8e-18 haloacid dehalogenase-like hydrolase family protein (.1) AT5G45170 67 / 2e-12 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) AT4G25840 62 / 8e-11 GPP1 glycerol-3-phosphatase 1 (.1) AT4G21470 62 / 1e-10 ATFMN/FHY riboflavin kinase/FMN hydrolase (.1) AT2G38740 59 / 7e-10 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) AT5G57440 50 / 5e-07 GPP2, GS1 GLYCEROL-3-PHOSPHATASE 2, Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023149 [exp] 614 / 0 AT4G39970 423 / 4e-150 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) Lus10013663 [exp] 174 / 2e-52 AT3G48420 427 / 4e-151 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) Lus10033034 [exp] 173 / 1e-51 AT3G48420 424 / 4e-150 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) Lus10020699 [exp] 73 / 5e-14 AT1G56500 1467 / 0.0 haloacid dehalogenase-like hydrolase family protein (.1) Lus10029840 [exp] 71 / 3e-13 AT1G56500 1528 / 0.0 haloacid dehalogenase-like hydrolase family protein (.1) Lus10018906 [exp] 69 / 5e-13 AT4G21470 556 / 0.0 riboflavin kinase/FMN hydrolase (.1) Lus10018435 [exp] 66 / 5e-12 AT4G21470 553 / 0.0 riboflavin kinase/FMN hydrolase (.1) Lus10006954 [exp] 59 / 7e-10 AT5G57440 387 / 4e-137 GLYCEROL-3-PHOSPHATASE 2, Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) Lus10028605 [exp] 59 / 1e-09 AT4G21470 558 / 0.0 riboflavin kinase/FMN hydrolase (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G095200 [exp] 456 / 3e-163 AT4G39970 439 / 3e-156 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) Potri.015G088500 [exp] 163 / 7e-48 AT3G48420 434 / 5e-154 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) Potri.013G007800 [exp] 73 / 5e-14 AT1G56500 1489 / 0.0 haloacid dehalogenase-like hydrolase family protein (.1) Potri.014G043500 [exp] 65 / 1e-11 AT2G38740 297 / 1e-101 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) Potri.003G086900 [exp] 60 / 3e-10 AT2G38740 359 / 6e-127 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) Potri.002G077200 [exp] 58 / 2e-09 AT4G21470 561 / 0.0 riboflavin kinase/FMN hydrolase (.1) Potri.001G147300 [exp] 57 / 3e-09 AT2G38740 360 / 5e-127 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) Potri.018G092500 [exp] 55 / 1e-08 AT5G57440 398 / 2e-142 GLYCEROL-3-PHOSPHATASE 2, Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) Potri.005G183400 [exp] 54 / 5e-08 AT4G21470 575 / 0.0 riboflavin kinase/FMN hydrolase (.1) Potri.001G147400 [exp] 47 / 5e-06 AT2G38740 350 / 2e-123 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0137 [flax] [poplar] HAD PF00702 [flax] [poplar] Hydrolase haloacid dehalogenase-like hydrolase
Representative CDS sequence Show only first row Show all	>Lus10000633 pacid=23175088 polypeptide=Lus10000633 locus=Lus10000633.g ID=Lus10000633.BGIv1.0 annot-version=v1.0 ATGGCGTCTTCAACGGTCACTCATCGCCTGAATTTCACCTCACCTTCATCCCTTCCGATCAACCGACTGTCCGCCGCCGCCTCATTCAAACCTCGATTCC TCCCATTCTCAACAAGGAAACGAACACAATCGTCTTCACTTGTGGTTTACGCCGCCACATCATCAGCTCTCAAGGCTCTTATATTCGACTGCGATGGAGT AATCCTGGAATCGGAACACCTCCACCGCCAAGCGTACAACGACGCCTTCGCTCATTTCAATGTCCGCTGCTCCCCCGACGCTACACTCAATTGGGACCTT GACTTCTACGACGACCTCCAGAACCGCATTGGCGGCGGCAAACCGAAAATGCGATGGTACTTCAAAGAGTTTGGATGGCCTTCTTCAACAGTCTTCTCCA CTCCTCCTGGTGATGATGAGAGCCGCGCCAAGTTGATTGACACTATTCAGGACTGGAAAACCGAGAGGTACAAGGATATAATCAAGTCTGGAACTGTGGA ACCGAGGCCAGGCGTGTTGAGGTTGATGGATGAGACCAAGGCTTCAGGGAAACTGCTAGCTGTTTGCTCTGCAGCAACCAAAAGCTCGGTCGTCCTCTGT CTCGAGAACCTCATCGGAATGGAGCGCTTTCAAGGTCTCGACTGCTTTCTTGCAGGTGATGATGTAAAGGAAAAGAAGCCTGATCCATCCATCTACTTGA CAGCCCTCAAGAAGCTAGGTGTGTCTGAGAAAGATTGTATGGTGGTCGAAGATAGTGTCATCGGTTTGCAGGCTGCAAAAGGTGCTGGAATGTCGTGCAT AATTACATACACCAGTTCGACCGCCAACCAGGATTTTACAGATGCTGCAGCCATGTACCCTGATCTGAGTAATGTGAGGTTACAAGATCTAGAGCTGTTG CTTCAGAACCCCGTTGCTACTTAG
AA sequence Show only first row Show all	>Lus10000633 pacid=23175088 polypeptide=Lus10000633 locus=Lus10000633.g ID=Lus10000633.BGIv1.0 annot-version=v1.0 MASSTVTHRLNFTSPSSLPINRLSAAASFKPRFLPFSTRKRTQSSSLVVYAATSSALKALIFDCDGVILESEHLHRQAYNDAFAHFNVRCSPDATLNWDL DFYDDLQNRIGGGKPKMRWYFKEFGWPSSTVFSTPPGDDESRAKLIDTIQDWKTERYKDIIKSGTVEPRPGVLRLMDETKASGKLLAVCSAATKSSVVLC LENLIGMERFQGLDCFLAGDDVKEKKPDPSIYLTALKKLGVSEKDCMVVEDSVIGLQAAKGAGMSCIITYTSSTANQDFTDAAAMYPDLSNVRLQDLELL LQNPVAT

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G39970			Haloacid dehalogenase-like hyd...		Lus10000633 [exp]	0	1
AT4G02920			unknown protein		Lus10029640 [exp]	1.4	0.9577
AT1G71500			Rieske (2Fe-2S) domain-contain...		Lus10001278 [exp]	4.0	0.9551
AT4G33270		AtCDC20.1, CDC2...	cell division cycle 20.1, Tran...		Lus10029716 [exp]	4.7	0.9293
AT1G44575		CP22, PSBS, NPQ...	PHOTOSYSTEM II SUBUNIT S, NONP...		Lus10042720 [exp]	4.9	0.9513
AT4G35250			NAD(P)-binding Rossmann-fold s...		Lus10022632 [exp]	4.9	0.9530
AT4G01060	MYB	CPL3, ETC3	ENHANCER OF TRY AND CPC 3, CAP...		Lus10005949 [exp]	5.7	0.9238
AT1G02800		ATCEL2	cellulase 2 (.1)		Lus10017338 [exp]	6.5	0.9489
AT4G35250			NAD(P)-binding Rossmann-fold s...		Lus10003328 [exp]	6.7	0.9490
AT3G49190			O-acyltransferase (WSD1-like) ...		Lus10017718 [exp]	7.1	0.9266
AT5G35970			P-loop containing nucleoside t...		Lus10024974 [exp]	7.7	0.9316

Compare expression of checked genes

Lus10000633 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.