Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G10320 299 / 4e-97 unknown protein AT2G22370 278 / 2e-91 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023150 [exp] 258 / 6e-83 AT2G22370 293 / 6e-101 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G073600 [exp] 350 / 4e-117 AT5G10320 436 / 2e-152 unknown protein Potri.007G095300 [exp] 276 / 1e-90 AT2G22370 359 / 1e-127 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10000634 pacid=23175096 polypeptide=Lus10000634 locus=Lus10000634.g ID=Lus10000634.BGIv1.0 annot-version=v1.0 ATGCAGCGAGCTAACTCTACCCTTGAGGATTTCTGCAGATCGTATTTCATGTTTCATGCGATGGATGTTAACAAGCCTGAGTTATTGTTCAAACACTTAC CGGTCCTCTCGTTCACTGAAAGTTACATTTATCAGATGGATAGTTGGAACGAAAAGATAGTTAATGTGGAGAAAACCAAAAGTTCATGTTTAGGAACAGG ATTTGAGGAAACTATGAATTTAGTGGGTATCCTTAAAAATGATCCATTTGGGCCTCTTGTGGTTCAATTGGAGTATCACGGCTTTCTCACCGAGAGGATC CAAGAAGAATTGAGGTGTGGAGAAGAGTATTGGTCCTTGGAAAGAAAGCTTTGTTCGGCACTTGCAAATCGAAAGGAGGTACACCACCAGCTCTATGTGT TATGTCGCGATCTATATGTCCATGTGCATGTGTCTGGTGGCCTTTCTGATTTCTTGGTAGTGCCGTATCTCTTAGAACCATATAAGGCTCATTTATTTAT CGAGTTCATGAATGTCCGTGCTTTATTAGTAACTGACCGTCCTTTTGAAGCTGTTCTAAAGGTGAATGACTTGCATATGGATTTCCTATCTGTATCAGAG TTTCTGGTCGAAATCGCTGATGATCTGTTTGATTACGAGGATGATGTCCTAGAGAACAGCTTCAATATACTGCGGATGTTCGTCAAAATATACGGACCTT CAAGAGCCCCAGCCATGCTGGCGAAATGCATAGGCGAAGCTGAAGAGAAGTACGAACGATTGCTCGAAGCGTTAGAGCCTCAGTTATCTGCAAGTTACAA GAGAAGGTGCGAAGAAGCAACAAGAGAAGGTGGGAAATCATCAGGAAATCCTATGGGAACGTGGAGTATACCCCATATAATTGCAGACGAAGAATCAGCG AAGAAACAGCTTGAGAAATCTTCACGTATCAAAAGTTCGCTCGTGATAATGGAGTGCGTGGTGCAGGGAATAATCGAGACTCAGCACGTGGAGGCCCTGG AGATACTTCTCCAAGGTCTTTGTGGTGTTCACAGAGAGCCCTTGAATGTCCATGAGCTATGCCTGAAAAGTGCTCCTATGCTTGGACCAGTTACTTCTGA AGTTCGACTCTTGTGTGACCTTGAACTTTCCGAACCCACTTGGACCGTCAAACATATTGGCGGTGCAATGAGAGGAGCTGGTGCTGATCAGATTTCTGTC CTTGTAAGGAGTATGGTTGAAAGCAAAGCTAGCAAAAATGTGCTCCGTCTATTCTATGCCCTTGCAAGATGCAGAAATTGCACGATGCAAAAATTGCCCG CCATTGATGATGCTGTGGCTGTAACTCCTGGGATCCAGCTTGTCGAAGAACCAGCCCCTGCAACCCCAGAGAACTATTCTGACGTTGTTTCTGCTGTCTC CTCCTTTTGTGAATATCTTGCACCGCTTCTGCATTTATCAAAGCCAGGTATTTCAACTGGTGTTGTTCCTACCGCTGCCGCAGCTGCAGCATCCCTCATG TCCGATGGTGGAGGCACACCTTTGTAG
AA sequence Show only first row Show all	>Lus10000634 pacid=23175096 polypeptide=Lus10000634 locus=Lus10000634.g ID=Lus10000634.BGIv1.0 annot-version=v1.0 MQRANSTLEDFCRSYFMFHAMDVNKPELLFKHLPVLSFTESYIYQMDSWNEKIVNVEKTKSSCLGTGFEETMNLVGILKNDPFGPLVVQLEYHGFLTERI QEELRCGEEYWSLERKLCSALANRKEVHHQLYVLCRDLYVHVHVSGGLSDFLVVPYLLEPYKAHLFIEFMNVRALLVTDRPFEAVLKVNDLHMDFLSVSE FLVEIADDLFDYEDDVLENSFNILRMFVKIYGPSRAPAMLAKCIGEAEEKYERLLEALEPQLSASYKRRCEEATREGGKSSGNPMGTWSIPHIIADEESA KKQLEKSSRIKSSLVIMECVVQGIIETQHVEALEILLQGLCGVHREPLNVHELCLKSAPMLGPVTSEVRLLCDLELSEPTWTVKHIGGAMRGAGADQISV LVRSMVESKASKNVLRLFYALARCRNCTMQKLPAIDDAVAVTPGIQLVEEPAPATPENYSDVVSAVSSFCEYLAPLLHLSKPGISTGVVPTAAAAAASLM SDGGGTPL

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G10320			unknown protein		Lus10000634 [exp]	0	1
AT4G31580		SRZ22, RSZP22, ...	RS-containing zinc finger prot...		Lus10020123 [exp]	2.8	0.8189
AT1G69010	bHLH	bHLH102, BIM2	BES1-interacting Myc-like prot...		Lus10034358 [exp]	5.9	0.8163
					Lus10042562 [exp]	6.5	0.8363
AT4G36400		D2HGDH	D-2-hydroxyglutarate dehydroge...		Lus10041792 [exp]	6.5	0.8221
					Lus10008178 [exp]	6.5	0.7756
AT4G01310			Ribosomal L5P family protein (...		Lus10010251 [exp]	7.3	0.8219
					Lus10033943 [exp]	7.4	0.8098
AT1G69630			F-box/RNI-like superfamily pro...		Lus10002239 [exp]	7.7	0.8158
AT5G14660		DEF2, PDF1B, AT...	peptide deformylase 1B (.1.2)		Lus10013086 [exp]	9.5	0.8137
AT1G17450			B-block binding subunit of TFI...		Lus10015659 [exp]	10.5	0.7985

Compare expression of checked genes

Lus10000634 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.