Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G65250 142 / 3e-40 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023151 [exp] 489 / 5e-176 AT5G65250 206 / 6e-65 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G073500 [exp] 190 / 1e-58 AT5G65250 122 / 1e-32 unknown protein Potri.007G095600 [exp] 189 / 5e-58 AT5G65250 162 / 7e-48 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10000635 pacid=23175089 polypeptide=Lus10000635 locus=Lus10000635.g ID=Lus10000635.BGIv1.0 annot-version=v1.0 ATGTTGCTCACCTCTCAACGCCTCTTCCTCACCTCACCTCCCCAATTCACCACCCTCCACCACCAGACTAACACCTATCTCCGGCCTACTCTCGGCAGCT CCTCCTACAAACCCCACCATCCGCCGCTGCTTTGCAGCTCCACGGTCAGGCTCCGAACAACTCTCAGTCCTCGAGCATACGGATCCGACGCCATCCTAAC CACGCCACCAACAGTAGTAGACGGTGTAACACTCGATGCTGTCCTGGCAGTTGCGGAATTCCTATGCATCGTTTCCTCGGCGATCGTCACGGTCAGCTAC GCGGTGAACTGCACGGTTCCGAGCTGTGGGAAGACGGCGGTGGTGTTGAGCGTGATCGGTAGCAATGGGGCGTTCGCTTGGGGGATGGCGGTGATGTTGG CCGGCGTGGTGATAGGCGGATGGGTGAGGCGGCGGCAGTGGAGAAGGATCTGTAGGGTTGAGAAAGGTACGGAGAGTGTGAATTTGATCGACAGGATTGA GAAATTGGAAGAGGATTTGAAGAGCTCTGTTGCGATTGTGCGGGTTTTGGCGAGGCAGCTTGAGAAGTTAGGGATCCGATTTCGGCTTACCAAGAAAGCC TTGAAAGAACCTATAGCCGAGACTGCAGCTTTGGCTCAGAAGAATTCGGAGGCAACCCGTGTATTAGCTATGCAAGAAAGCAATCTAGAAAAGGAACTCG CTGAAATTCAGAAGCTTCTCTTTGCAATGCAGGAGCAGCAACAGAAGCAGCTAGAGCTGATCCTGGCAGTTGCCAAGTCTGGGAAGCTATGGGAAACCAA GCAAGAACATAGCCCCCAACAAGAAACGATAAAAACATCAGAACCAAAACTCTCGGAAACCCGCAAGCCTCGACCATCACGTGCAAGCATGAGATCCAAC AATGAGAAATTGTAG
AA sequence Show only first row Show all	>Lus10000635 pacid=23175089 polypeptide=Lus10000635 locus=Lus10000635.g ID=Lus10000635.BGIv1.0 annot-version=v1.0 MLLTSQRLFLTSPPQFTTLHHQTNTYLRPTLGSSSYKPHHPPLLCSSTVRLRTTLSPRAYGSDAILTTPPTVVDGVTLDAVLAVAEFLCIVSSAIVTVSY AVNCTVPSCGKTAVVLSVIGSNGAFAWGMAVMLAGVVIGGWVRRRQWRRICRVEKGTESVNLIDRIEKLEEDLKSSVAIVRVLARQLEKLGIRFRLTKKA LKEPIAETAALAQKNSEATRVLAMQESNLEKELAEIQKLLFAMQEQQQKQLELILAVAKSGKLWETKQEHSPQQETIKTSEPKLSETRKPRPSRASMRSN NEKL

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G65250			unknown protein		Lus10000635 [exp]	0	1
AT2G43100		ATLEUD1, IPMI2	isopropylmalate isomerase 2 (....		Lus10004742 [exp]	1.0	0.8732
AT5G65250			unknown protein		Lus10023151 [exp]	1.7	0.8718
AT1G69910			Protein kinase superfamily pro...		Lus10036691 [exp]	2.4	0.8730
AT2G45590			Protein kinase superfamily pro...		Lus10041395 [exp]	3.5	0.8692
AT4G17600		LIL3:1	Chlorophyll A-B binding family...		Lus10001008 [exp]	4.9	0.8598
AT2G26110			Protein of unknown function (D...		Lus10019517 [exp]	5.5	0.8491
AT3G52610			unknown protein		Lus10014214 [exp]	6.3	0.8002
AT4G34340		TAF8	TBP-associated factor 8 (.1)		Lus10026530 [exp]	6.5	0.8597
AT3G63170			Chalcone-flavanone isomerase f...		Lus10022046 [exp]	7.2	0.8445
AT2G21170		PDTPI, TIM	PLASTID ISOFORM TRIOSE PHOSPHA...		Lus10007575 [exp]	8.4	0.8626

Compare expression of checked genes

Lus10000635 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.