Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G39980 856 / 0 DHS1 3-deoxy-D-arabino-heptulosonate 7-phosphate synthase 1 (.1) AT1G22410 843 / 0 Class-II DAHP synthetase family protein (.1) AT4G33510 828 / 0 DHS2 3-deoxy-d-arabino-heptulosonate 7-phosphate synthase (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023152 [exp] 1012 / 0 AT4G39980 847 / 0.0 3-deoxy-D-arabino-heptulosonate 7-phosphate synthase 1 (.1) Lus10025739 [exp] 898 / 0 AT4G39980 848 / 0.0 3-deoxy-D-arabino-heptulosonate 7-phosphate synthase 1 (.1) Lus10035923 [exp] 876 / 0 AT1G22410 840 / 0.0 Class-II DAHP synthetase family protein (.1) Lus10001002 [exp] 780 / 0 AT4G33510 818 / 0.0 3-deoxy-d-arabino-heptulosonate 7-phosphate synthase (.1.2) Lus10011022 [exp] 643 / 0 AT4G33510 658 / 0.0 3-deoxy-d-arabino-heptulosonate 7-phosphate synthase (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G073300 [exp] 889 / 0 AT4G39980 891 / 0.0 3-deoxy-D-arabino-heptulosonate 7-phosphate synthase 1 (.1) Potri.005G162800 [exp] 886 / 0 AT1G22410 869 / 0.0 Class-II DAHP synthetase family protein (.1) Potri.002G099200 [exp] 879 / 0 AT1G22410 845 / 0.0 Class-II DAHP synthetase family protein (.1) Potri.007G095700 [exp] 813 / 0 AT4G39980 796 / 0.0 3-deoxy-D-arabino-heptulosonate 7-phosphate synthase 1 (.1) Potri.001G150500 [exp] 794 / 0 AT4G33510 819 / 0.0 3-deoxy-d-arabino-heptulosonate 7-phosphate synthase (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0036 [flax] [poplar] TIM_barrel PF01474 [flax] [poplar] DAHP_synth_2 Class-II DAHP synthetase family
Representative CDS sequence Show only first row Show all	>Lus10000636 pacid=23175091 polypeptide=Lus10000636 locus=Lus10000636.g ID=Lus10000636.BGIv1.0 annot-version=v1.0 ATGGCGCTTTCCACTCTATCCTCCACCTCCAACTACCCCTCCTCCTCTTCACATTCCCTAAACACCCATCTCCACCAAACCCTCAAACCCAATTTCCCCA CCTGGAACCCTCACCCCAGTTCCAGATCCACTCTCCGTTCGATCTCCGCCGTCCACGCCGCCGAGCCCGCCAAACTCCCCGTCAAGGAATCATCCCCTCC CTCCACAGCCTCCCTAAAATGGACTGTCGAAAGCTGGAAGACGAAGAAGGCATTGCAGCTCCCCGAGTACCCGAACGCTGCCGATTTCGACGACGTATTG AAGACGATCGAGGAGTTCCCCCCGTTGGTTTTCGCAGGGGAAGCGAGGAGCCTTGAGGAGAAGCTTGGGGAAGCTGCCGTTGGGAAGGCGTTCTTGTTGC AAGGTGGGGATTGTGCTGAGAGTTTCAAGGAGTTTAATGCTAATAATATTAGGGATACTTTCAGGATATTGCTTCAGATGGGTGCCGTTCTCATGTTCGG CGGCCAAATGCCTGTGATTAAGGTGGGTAGAATGGCTGGCCAATTTGCTAAGCCAAGGTCAGATGCATATGAAGAGAAGGATGGGAAGAAGCTTCCTAGC TACAAAGGAGACAATATCAACGGCGATGCTTTCACCGACAAGTCAAGGATTCCAGATCCACAGAGGATGATCAGAGCTTATTGCCAATCCGCCGCTACTC TCAACCTTCTTAGGGCCTTTGCCACTGGTGGATATGCCGCCATGCAAAGGGTTACCCACTGGAACCTGGATTTCGCTGAGCACAGCGAGCAGGGAGATAG GTACCAAGAGTTGGCGAATCGAGTTGATGAGGCCTTAGGGTTCATGGCTGCTGCTGGATTGACGGTAGATCATCCGATAATGACCACCACTGAATTCTGG ACTTCCCACGAGTGCTTACTTTTGCCGTATGAGCAGTCTCTTACGAGGTTGGATTCGACATCTGGCTTGTACTATGATTGTTCGGCTCACATGCTGTGGT GTGGTGAACGAACTCGTCAACTTGATGGTGCCCATGTCGAGTTCCTTAGAGGAATCTCCAATCCTCTAGGAATCAAGGTAAGCCAGAAAATGGACCCGAC TGAGTTGGTGAAACTAATTGAGATCTTGAACCCTGCTAATAAGCCTGGGAGGATAACAATCATCTGCAGAATGGGAGCTGAAAACATGAGAGTCAAGCTT CCTCACTTAATTAGAGCTGTACGAAGATCCGGACAAATTGTTACATGGGTCTCCGATCCAATGCACGGGAACACTATCAAGGCACCTTGTGGTCTCAAAA CGCGTCCCTTTGATAATATCCTGGCTGAAGTGCGTGCATTCTTCGACGTCCACGAGCAAGAAGGAAGCAACCCAGGAGGAATTCACCTTGAGATGACCGG GCAGAACGTGACCGAATGCATCGGAGGGTCACGAACAGTAACGTTCGACGACCTGAGCTCTCGCTACCACACCCACTGCGACCCAAGGCTGAACGCGTCG CAAGCACTGGAGCTATCTTTCATCATTGCAGAGCGGCTCAGAAAGAAGAGGATAGGAAACAAAGGTTTCCTCAAAGTGTAA
AA sequence Show only first row Show all	>Lus10000636 pacid=23175091 polypeptide=Lus10000636 locus=Lus10000636.g ID=Lus10000636.BGIv1.0 annot-version=v1.0 MALSTLSSTSNYPSSSSHSLNTHLHQTLKPNFPTWNPHPSSRSTLRSISAVHAAEPAKLPVKESSPPSTASLKWTVESWKTKKALQLPEYPNAADFDDVL KTIEEFPPLVFAGEARSLEEKLGEAAVGKAFLLQGGDCAESFKEFNANNIRDTFRILLQMGAVLMFGGQMPVIKVGRMAGQFAKPRSDAYEEKDGKKLPS YKGDNINGDAFTDKSRIPDPQRMIRAYCQSAATLNLLRAFATGGYAAMQRVTHWNLDFAEHSEQGDRYQELANRVDEALGFMAAAGLTVDHPIMTTTEFW TSHECLLLPYEQSLTRLDSTSGLYYDCSAHMLWCGERTRQLDGAHVEFLRGISNPLGIKVSQKMDPTELVKLIEILNPANKPGRITIICRMGAENMRVKL PHLIRAVRRSGQIVTWVSDPMHGNTIKAPCGLKTRPFDNILAEVRAFFDVHEQEGSNPGGIHLEMTGQNVTECIGGSRTVTFDDLSSRYHTHCDPRLNAS QALELSFIIAERLRKKRIGNKGFLKV

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G39980		DHS1	3-deoxy-D-arabino-heptulosonat...		Lus10000636 [exp]	0	1
AT3G21240		AT4CL2, 4CL2	4-coumarate:CoA ligase 2 (.1)		Lus10024123 [exp]	2.4	0.9696
AT1G19170			Pectin lyase-like superfamily ...		Lus10039909 [exp]	3.2	0.9715
AT1G52760		LysoPL2	lysophospholipase 2 (.1)		Lus10035909 [exp]	5.7	0.9606
AT3G19450		CAD-C, ATCAD4	CINNAMYL ALCOHOL DEHYDROGENASE...		Lus10027864 [exp]	13.2	0.9543
AT2G37040		PAL1, ATPAL1	PHE ammonia lyase 1 (.1)		Lus10023531 [exp]	13.4	0.9451
AT4G39980		DHS1	3-deoxy-D-arabino-heptulosonat...		Lus10023152 [exp]	13.8	0.9566
AT4G34050		CCoAOMT1	caffeoyl coenzyme A O-methyltr...		Lus10002837 [exp]	15.6	0.9593
AT1G12260	NAC	ANAC007, VND4, ...	VASCULAR RELATED NAC-DOMAIN PR...		Lus10031142 [exp]	17.3	0.9555
AT5G12300			Calcium-dependent lipid-bindin...		Lus10009692 [exp]	18.7	0.9259
AT5G50090			unknown protein		Lus10034124 [exp]	23.7	0.8714

Compare expression of checked genes

Lus10000636 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.