Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G65270 396 / 5e-142 AtRABA4a RAB GTPase homolog A4A (.1) AT4G39990 367 / 9e-131 ATGB3, AtRABA4b, AtRab11G ARABIDOPSIS THALIANA RAB GTPASE HOMOLOG A 4B, GTP-BINDING PROTEIN 3, RAB GTPase homolog A4B (.1) AT3G12160 338 / 2e-119 AtRABA4d ARABIDOPSIS THALIANA RAB GTPASE HOMOLOG A4D, RAB GTPase homolog A4D (.1) AT5G47960 328 / 3e-115 SMG1, AtRABA4c SMALL MOLECULAR WEIGHT G-PROTEIN 1, RAB GTPase homolog A4C (.1) AT1G09630 278 / 1e-95 ATRAB-A2A, ATRAB11C, ATRABA2A ARABIDOPSIS RAB GTPASE A2A, RAB GTPase 11C (.1) AT1G07410 273 / 9e-94 ATRAB-A2B, AtRABA2b ARABIDOPSIS RAB GTPASE HOMOLOG A2B, RAB GTPase homolog A2B (.1) AT5G47520 272 / 3e-93 AtRABA5a RAB GTPase homolog A5A (.1) AT4G18800 268 / 2e-91 AthSGBP, AtRab11B, AtRABA1d RAB GTPase homolog A1D (.1) AT3G46830 264 / 4e-90 ATRAB-A2C, AtRab11A, AtRABA2c ARABIDOPSIS RAB GTPASE HOMOLOG A2C, RAB GTPase homolog A2C (.1) AT5G59150 261 / 4e-89 ATRAB-A2D, AtRABA2d ARABIDOPSIS RAB GTPASE HOMOLOG A2D, RAB GTPase homolog A2D (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023153 [exp] 459 / 7e-167 AT5G65270 396 / 3e-142 RAB GTPase homolog A4A (.1) Lus10025738 [exp] 425 / 2e-153 AT5G65270 404 / 4e-145 RAB GTPase homolog A4A (.1) Lus10035924 [exp] 425 / 2e-153 AT5G65270 404 / 3e-145 RAB GTPase homolog A4A (.1) Lus10016284 [exp] 320 / 4e-112 AT3G12160 386 / 2e-138 ARABIDOPSIS THALIANA RAB GTPASE HOMOLOG A4D, RAB GTPase homolog A4D (.1) Lus10012032 [exp] 316 / 2e-110 AT3G12160 379 / 1e-135 ARABIDOPSIS THALIANA RAB GTPASE HOMOLOG A4D, RAB GTPase homolog A4D (.1) Lus10023829 [exp] 308 / 5e-105 AT3G12160 377 / 5e-132 ARABIDOPSIS THALIANA RAB GTPASE HOMOLOG A4D, RAB GTPase homolog A4D (.1) Lus10021023 [exp] 313 / 1e-104 AT3G12160 384 / 3e-132 ARABIDOPSIS THALIANA RAB GTPASE HOMOLOG A4D, RAB GTPase homolog A4D (.1) Lus10014732 [exp] 293 / 2e-101 AT5G47960 332 / 6e-117 SMALL MOLECULAR WEIGHT G-PROTEIN 1, RAB GTPase homolog A4C (.1) Lus10002725 [exp] 292 / 6e-101 AT5G47960 334 / 1e-117 SMALL MOLECULAR WEIGHT G-PROTEIN 1, RAB GTPase homolog A4C (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G096000 [exp] 400 / 1e-143 AT5G65270 404 / 2e-145 RAB GTPase homolog A4A (.1) Potri.005G073000 [exp] 397 / 1e-142 AT5G65270 402 / 1e-144 RAB GTPase homolog A4A (.1) Potri.001G270100 [exp] 334 / 1e-117 AT3G12160 379 / 2e-135 ARABIDOPSIS THALIANA RAB GTPASE HOMOLOG A4D, RAB GTPase homolog A4D (.1) Potri.016G050400 [exp] 322 / 4e-113 AT3G12160 387 / 1e-138 ARABIDOPSIS THALIANA RAB GTPASE HOMOLOG A4D, RAB GTPase homolog A4D (.1) Potri.006G057700 [exp] 322 / 8e-113 AT3G12160 387 / 1e-138 ARABIDOPSIS THALIANA RAB GTPASE HOMOLOG A4D, RAB GTPase homolog A4D (.1) Potri.003G004100 [exp] 286 / 1e-98 AT1G09630 382 / 6e-137 ARABIDOPSIS RAB GTPASE A2A, RAB GTPase 11C (.1) Potri.010G197200 [exp] 279 / 6e-96 AT1G07410 370 / 3e-132 ARABIDOPSIS RAB GTPASE HOMOLOG A2B, RAB GTPase homolog A2B (.1) Potri.014G102200 [exp] 276 / 2e-94 AT1G01200 332 / 2e-116 ARABIDOPSIS RAB GTPASE HOMOLOG A3, RAB GTPase homolog A3 (.1) Potri.006G000300 [exp] 275 / 2e-94 AT1G07410 400 / 4e-144 ARABIDOPSIS RAB GTPASE HOMOLOG A2B, RAB GTPase homolog A2B (.1) Potri.002G175700 [exp] 271 / 2e-92 AT1G01200 333 / 4e-117 ARABIDOPSIS RAB GTPASE HOMOLOG A3, RAB GTPase homolog A3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF00071 [flax] [poplar] Ras Ras family
Representative CDS sequence Show only first row Show all	>Lus10000637 pacid=23175095 polypeptide=Lus10000637 locus=Lus10000637.g ID=Lus10000637.BGIv1.0 annot-version=v1.0 ATGGCAGGGTACGGGGATCCGAGTCAGAAAGTTGACTACGTCTTCAAGGTGGTGCTGATCGGAGATTCGGCGGTCGGCAAGTCGCAGATACTTGCTAGAT TCGCGAGGAACGAGTTCAGTCTTGACTCCAAGGCTACAATCGGGGTCGAGTTCCAGACCAGGACTATGGTTATCAGCCACAAGAGCGTCAAGGCTCAGAT CTGGGACACTGCTGGTCAGGAGCGATACAGGGCGGTGACAAGTGCATACTACAGGGGAGCGGTAGGCGCGATGCTAGTCTATGACATAACAAAACGCCAG ACGTTCGACCACATCCCTCGGTGGCTAGAAGAGCTACGAGGCCACGCCGACAAGAACATAGTCATAATCCTGATCGGGAACAAGTCCGACCTCGAGGACC AGAGGGCAGTTTCCACAGAGGACGCCAAGGAGTTCGCCCAGAAGGAAGGCTTGTTCTTCCTCGAAACCTCGGCGCTGAATGCCACCAACGTGGAGTCGGC CTTCGAGACGGTGTTGACGGAGATCTTCAACATCGTGAACAAGAAGACCCTGACTGCCGACGAGAGTCAGGGGAATGGGAACTCGGCAGCCTCGTTGGCC GGTAGCAAGATCGTGGTGCCTGGCCCTGCTCAGGAAGCCCCGGCCAAGAGTAACGTGTGCTGCACATCATCTTGA
AA sequence Show only first row Show all	>Lus10000637 pacid=23175095 polypeptide=Lus10000637 locus=Lus10000637.g ID=Lus10000637.BGIv1.0 annot-version=v1.0 MAGYGDPSQKVDYVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTMVISHKSVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDITKRQ TFDHIPRWLEELRGHADKNIVIILIGNKSDLEDQRAVSTEDAKEFAQKEGLFFLETSALNATNVESAFETVLTEIFNIVNKKTLTADESQGNGNSAASLA GSKIVVPGPAQEAPAKSNVCCTSS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G65270		AtRABA4a	RAB GTPase homolog A4A (.1)		Lus10000637 [exp]	0	1
AT3G08670			unknown protein		Lus10025209 [exp]	1.4	0.9152
AT3G46550		FLA4, SOS5	salt overly sensitive 5, fasci...		Lus10040821 [exp]	3.0	0.8939
AT5G19570			unknown protein		Lus10012977 [exp]	3.7	0.8852
AT5G40150			Peroxidase superfamily protein...		Lus10039445 [exp]	4.9	0.8920
AT4G12730		FLA2	FASCICLIN-like arabinogalactan...		Lus10012344 [exp]	6.3	0.8902
AT3G06590	bHLH	bHLH148, AIF2	basic helix-loop-helix (bHLH) ...		Lus10037783 [exp]	6.9	0.8803
AT1G07420		SMO2-1, ATSMO1,...	Arabidopsis thaliana sterol 4-...		Lus10016492 [exp]	7.1	0.8988
AT4G22550			Phosphatidic acid phosphatase ...		Lus10004345 [exp]	7.1	0.8789
AT1G01225			NC domain-containing protein-r...		Lus10030231 [exp]	8.1	0.8605
AT3G49720			unknown protein		Lus10019279 [exp]	12.0	0.8782

Compare expression of checked genes

Lus10000637 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.