Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G17840 132 / 1e-35 AtABCG11, WBC11, DSO, ABCG11 ,COF1, ATWBC11 DESPERADO, CUTICULAR DEFECT AND ORGAN FUSION 1, ARABIDOPSIS THALIANA WHITE-BROWN COMPLEX HOMOLOG PROTEIN 11, ATP-binding cassette G11, white-brown complex homolog protein 11 (.1) AT3G21090 122 / 6e-32 ABCG15 ATP-binding cassette G15, ABC-2 type transporter family protein (.1) AT1G51460 103 / 2e-25 ABCG13 ATP-binding cassette G13, ABC-2 type transporter family protein (.1) AT1G51500 99 / 7e-24 AtABCG12, WBC12, ABCG12, D3, CER5, ATWBC12 ECERIFERUM 5, ARABIDOPSIS THALIANA WHITE-BROWN COMPLEX 12, ATP-binding cassette G12, ABC-2 type transporter family protein (.1) AT2G28070 91 / 3e-21 ABCG3 ATP-binding cassette G3, ABC-2 type transporter family protein (.1) AT5G19410 61 / 1e-10 ABCG23 ATP-binding cassette G23, ABC-2 type transporter family protein (.1) AT1G53270 58 / 9e-10 ABCG10 ATP-binding cassette G10, ABC-2 type transporter family protein (.1) AT5G52860 56 / 6e-09 ABCG8 ATP-binding cassette G8, ABC-2 type transporter family protein (.1) AT4G25750 51 / 2e-07 ABCG4 ATP-binding cassette G4, ABC-2 type transporter family protein (.1) AT2G13610 50 / 2e-07 ABCG5 ATP-binding cassette G5, ABC-2 type transporter family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023154 [exp] 269 / 2e-86 AT1G17840 613 / 0.0 DESPERADO, CUTICULAR DEFECT AND ORGAN FUSION 1, ARABIDOPSIS THALIANA WHITE-BROWN COMPLEX HOMOLOG PROTEIN 11, ATP-binding cassette G11, white-brown complex homolog protein 11 (.1) Lus10018268 [exp] 130 / 2e-35 AT1G17840 849 / 0.0 DESPERADO, CUTICULAR DEFECT AND ORGAN FUSION 1, ARABIDOPSIS THALIANA WHITE-BROWN COMPLEX HOMOLOG PROTEIN 11, ATP-binding cassette G11, white-brown complex homolog protein 11 (.1) Lus10040644 [exp] 128 / 4e-34 AT1G17840 1120 / 0.0 DESPERADO, CUTICULAR DEFECT AND ORGAN FUSION 1, ARABIDOPSIS THALIANA WHITE-BROWN COMPLEX HOMOLOG PROTEIN 11, ATP-binding cassette G11, white-brown complex homolog protein 11 (.1) Lus10009961 [exp] 113 / 1e-28 AT3G21090 971 / 0.0 ATP-binding cassette G15, ABC-2 type transporter family protein (.1) Lus10009959 [exp] 102 / 4e-25 AT3G21090 860 / 0.0 ATP-binding cassette G15, ABC-2 type transporter family protein (.1) Lus10027354 [exp] 100 / 3e-24 AT3G21090 868 / 0.0 ATP-binding cassette G15, ABC-2 type transporter family protein (.1) Lus10009960 [exp] 100 / 3e-24 AT3G21090 855 / 0.0 ATP-binding cassette G15, ABC-2 type transporter family protein (.1) Lus10000339 [exp] 96 / 8e-23 AT1G51460 837 / 0.0 ATP-binding cassette G13, ABC-2 type transporter family protein (.1) Lus10000338 [exp] 95 / 2e-22 AT3G21090 532 / 0.0 ATP-binding cassette G15, ABC-2 type transporter family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G073050 [exp] 223 / 1e-68 AT1G17840 659 / 0.0 DESPERADO, CUTICULAR DEFECT AND ORGAN FUSION 1, ARABIDOPSIS THALIANA WHITE-BROWN COMPLEX HOMOLOG PROTEIN 11, ATP-binding cassette G11, white-brown complex homolog protein 11 (.1) Potri.005G073100 [exp] 222 / 2e-68 AT1G17840 661 / 0.0 DESPERADO, CUTICULAR DEFECT AND ORGAN FUSION 1, ARABIDOPSIS THALIANA WHITE-BROWN COMPLEX HOMOLOG PROTEIN 11, ATP-binding cassette G11, white-brown complex homolog protein 11 (.1) Potri.001G311300 [exp] 196 / 6e-59 AT1G17840 617 / 0.0 DESPERADO, CUTICULAR DEFECT AND ORGAN FUSION 1, ARABIDOPSIS THALIANA WHITE-BROWN COMPLEX HOMOLOG PROTEIN 11, ATP-binding cassette G11, white-brown complex homolog protein 11 (.1) Potri.001G312300 [exp] 196 / 6e-59 AT1G17840 624 / 0.0 DESPERADO, CUTICULAR DEFECT AND ORGAN FUSION 1, ARABIDOPSIS THALIANA WHITE-BROWN COMPLEX HOMOLOG PROTEIN 11, ATP-binding cassette G11, white-brown complex homolog protein 11 (.1) Potri.017G051000 [exp] 181 / 3e-53 AT1G17840 596 / 0.0 DESPERADO, CUTICULAR DEFECT AND ORGAN FUSION 1, ARABIDOPSIS THALIANA WHITE-BROWN COMPLEX HOMOLOG PROTEIN 11, ATP-binding cassette G11, white-brown complex homolog protein 11 (.1) Potri.017G051300 [exp] 180 / 4e-53 AT1G17840 611 / 0.0 DESPERADO, CUTICULAR DEFECT AND ORGAN FUSION 1, ARABIDOPSIS THALIANA WHITE-BROWN COMPLEX HOMOLOG PROTEIN 11, ATP-binding cassette G11, white-brown complex homolog protein 11 (.1) Potri.017G155300 [exp] 129 / 2e-34 AT1G17840 1174 / 0.0 DESPERADO, CUTICULAR DEFECT AND ORGAN FUSION 1, ARABIDOPSIS THALIANA WHITE-BROWN COMPLEX HOMOLOG PROTEIN 11, ATP-binding cassette G11, white-brown complex homolog protein 11 (.1) Potri.018G152600 [exp] 128 / 4e-34 AT1G17840 1152 / 0.0 DESPERADO, CUTICULAR DEFECT AND ORGAN FUSION 1, ARABIDOPSIS THALIANA WHITE-BROWN COMPLEX HOMOLOG PROTEIN 11, ATP-binding cassette G11, white-brown complex homolog protein 11 (.1) Potri.009G051200 [exp] 119 / 5e-31 AT3G21090 1008 / 0.0 ATP-binding cassette G15, ABC-2 type transporter family protein (.1) Potri.001G255800 [exp] 119 / 7e-31 AT3G21090 1038 / 0.0 ATP-binding cassette G15, ABC-2 type transporter family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0181 [flax] [poplar] ABC-2 PF01061 [flax] [poplar] ABC2_membrane ABC-2 type transporter
Representative CDS sequence Show only first row Show all	>Lus10000638 pacid=23175093 polypeptide=Lus10000638 locus=Lus10000638.g ID=Lus10000638.BGIv1.0 annot-version=v1.0 ATGTTACTTTACAAAAATCTTCTACGTCAGAAAAGGAGCCGGTTGAACGGACACTACGGAGTGGGAGCGTTCGTGATAGGCAACACGATCTCCTCAATCC CGGAGCTCTTCCTAATCTCCATAATCCCGGGAGCAATATCATACTTCCTTGTCGGCCTACAGCGAACCTTTGAGCACTTTGCCTACTTCATCCTCCTCCT CTTCGTCATGATGATGCTAGTGAAGAGCCTGATGATGATGGCGGCCAGCATCGTCTCGGACTTTTTGATGAGGATCATCACGGGAGCCGGGATCCAGGGT GTCATGATGCTGAACGGTGGCTTCTTCAGGCCCCCGAACGGCCTTCCCAACCCGTTTTGGAGGTACCCTATGTACTACATTGCCTTCCACAAGTATACCT TCCAAGGGTTCTACAAGAACGAGTTCCTAGGGCTTGTGTTCCCTGGTCAACAAGGAAGTTCCACCACAACCATTGGTGGTGAAGAGATTCTGAGGAGCAT ATGGCAAGTTGAGATGGTGTATTCTAAGTGGCTTGATCTTGGTGTGTTGCTTGGGATGGTGGTTGTTTTCAGGGTTATGTTTCTTGGGATTGTTAAGCTT CTTGAGAAGGTCAAGCCCTTGTTCAAGAAAAGCGGTTGA
AA sequence Show only first row Show all	>Lus10000638 pacid=23175093 polypeptide=Lus10000638 locus=Lus10000638.g ID=Lus10000638.BGIv1.0 annot-version=v1.0 MLLYKNLLRQKRSRLNGHYGVGAFVIGNTISSIPELFLISIIPGAISYFLVGLQRTFEHFAYFILLLFVMMMLVKSLMMMAASIVSDFLMRIITGAGIQG VMMLNGGFFRPPNGLPNPFWRYPMYYIAFHKYTFQGFYKNEFLGLVFPGQQGSSTTTIGGEEILRSIWQVEMVYSKWLDLGVLLGMVVVFRVMFLGIVKL LEKVKPLFKKSG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G17840		AtABCG11, WBC11...	DESPERADO, CUTICULAR DEFECT AN...		Lus10000638 [exp]	0	1
AT3G19760		EIF4A-III	eukaryotic initiation factor 4...		Lus10040975 [exp]	7.3	0.9180
AT3G22142			Bifunctional inhibitor/lipid-t...		Lus10010482 [exp]	8.9	0.9107
AT5G16080		ATCXE17	carboxyesterase 17 (.1)		Lus10002019 [exp]	13.5	0.9024
					Lus10010481 [exp]	15.2	0.9019
AT1G17930			Aminotransferase-like, plant m...		Lus10000686 [exp]	16.9	0.8951
AT1G79690		ATNUDT3	nudix hydrolase homolog 3 (.1)		Lus10024090 [exp]	17.1	0.9007
AT3G48420			Haloacid dehalogenase-like hyd...		Lus10016820 [exp]	19.0	0.8981
AT1G57790			F-box family protein (.1)		Lus10004476 [exp]	20.1	0.9017
					Lus10041394 [exp]	21.9	0.8918
AT1G31710			Copper amine oxidase family pr...		Lus10010540 [exp]	25.1	0.8987

Compare expression of checked genes

Lus10000638 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.