Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G16780 704 / 0 MDF, DOT2 MERISTEM-DEFECTIVE, DEFECTIVELY ORGANIZED TRIBUTARIES 2, SART-1 family (.1) AT3G14700 97 / 1e-22 SART-1 family (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023155 [exp] 1328 / 0 AT5G16780 811 / 0.0 MERISTEM-DEFECTIVE, DEFECTIVELY ORGANIZED TRIBUTARIES 2, SART-1 family (.1) Lus10000285 [exp] 382 / 1e-125 AT5G16780 187 / 1e-53 MERISTEM-DEFECTIVE, DEFECTIVELY ORGANIZED TRIBUTARIES 2, SART-1 family (.1) Lus10014613 [exp] 121 / 4e-32 AT5G16780 110 / 6e-29 MERISTEM-DEFECTIVE, DEFECTIVELY ORGANIZED TRIBUTARIES 2, SART-1 family (.1) Lus10032078 [exp] 76 / 4e-16 AT5G16780 47 / 8e-07 MERISTEM-DEFECTIVE, DEFECTIVELY ORGANIZED TRIBUTARIES 2, SART-1 family (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G082100 [exp] 776 / 0 AT5G16780 767 / 0.0 MERISTEM-DEFECTIVE, DEFECTIVELY ORGANIZED TRIBUTARIES 2, SART-1 family (.1) Potri.003G148501 [exp] 0 / 1 AT5G16780 0 / 1 MERISTEM-DEFECTIVE, DEFECTIVELY ORGANIZED TRIBUTARIES 2, SART-1 family (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03343 [flax] [poplar] SART-1 SART-1 family
Representative CDS sequence Show only first row Show all	>Lus10000639 pacid=23175092 polypeptide=Lus10000639 locus=Lus10000639.g ID=Lus10000639.BGIv1.0 annot-version=v1.0 ATGGATAAGAAGCATTACGAGTCTAGGCATGATCGACGTGAGGAATTGGTTGATCGTGATGATTCTCCAAGACCAGTTGATGAAGATATGGGGCTAAATG GAGTTGAAAAGTCTAGCAAGCATGATAGTAGAAATAAGGACAGGAAGAAAAGAAGCAGGGCAGAAGATAAAGAGAGAGACAGAGACAAGGATCATAGATA TAAAGACCGGGAAAGATCTAAGAAGACTAGTGATGATGTTTCAACTGATTTGGACAAGGAACATTTGAAGTACAATGAGCAAGGTAAAGATAGGATCAAG GATATCAAGGGTAAAGATAAAGATCATGATCGAGACAGATCTAGAGAAAAGGAACGAGATAAAGATAAGGAGAGAAAAGATCGAGGGAAGGATAAGGAGC GTGATAGGGGGAGAGAGACTGATAAAGAAAGAGGCAAGGAAAAGAATAGGGATAGAGAAATAGCAAAGGATAAAGAAAGAGAGAAGGAGAATCAGAAACT TAAGGATCTAGAGAAGCTGAGGGAAAATGATAAAGACGGAGACAGAAAAAGGGGAAGAGAGAATGCTAAAGAAAGAGAATTGGATCAAGGTAAAGAAAGG TCTAGGGAAAGAGATGGGACAAGCAAAGAGGACAGGCAAGACGACCCTGAGTGGTCTAAAATGCTGATGGGTCAGGAATATGATGGACATAAGGATGTGT TGACATCTTCTTTTGATGGAGATCAGAAAAATGCCGAGAGGTCTTTCACTGGAGGACAGACATCAACATCCGAACTCAGGGAGCGTATTATGAAGATGAA AGAAGAACGGACAAGTAAGTCAGAAGCTAGTTCGGAAATCCTGTCTTGGGTCAACAAAACTCGTAAGCTTGAAGAAAAAAGGAACATTGCAAGGGAAAAA GCTAAGTGGCTGTCAAAGAACTTTGAGGAACAGGATAATCTTGGTCAAGGAGGAAGTGATGATGAAGAGGCAGCCCAAAACCATACACATGATTTAGCGG GAGTCAAAGTTCTTGATGGTCTAGACAAGGTGATAGAGGGTGGATCAGTGGTTTTGACACTAAAAGACCAAAGTATACTTGCCGATGGAGACATCAATAA TGAGGTTGATATGCTCGAGAATATTGAGATCGGGGAGCAGAAACGGCGAGATGATGCTTACAAGGCTGCAAAGAAGCCAGCAGGGATATATTCTGAAGAC AGGTTCAATGATGACCCTATGGCAGAGAAAAAGATGCTTCCTCAATACGATGAACCTGTGGATGAGGGAGTGACCTTGGACAACAGAGGCCATTTCAGTG GTGAAGCAGAGAAAAAACTGGAGGAGTTGCGTAAAAGGCTACAAGGCGGTTCAACAAATAATCACACTGAAGATCTAAACTCGTCTGGAAAAATCTTGTC TGATTACTATTCTCAAGAAGAAATGATTCAGTTTAAGAAGCCAAAGAAAAAGAAATCCTTGCGAAAGAAGGATAAGTTGGACATTAAAGCTCTAGAAGAA GAAGCCATTGCTGAAGGGTTAGGAGCCGGTGATCTTGGTTCAAGGAATGATGGTAGAAGGAAGGCTAGAGAGGAGCAGGAGAGACATGAGGCGGAATTGA GAACTGCTGCATATCAGCTAGCTTTAGCTAAAGCAGATGAGGCATCTAAAGCATTGCGATTAGGACACACAAATCCTGTTTCAAAGGAAGACATTGATGA TGTGATGGTTGATGAGGAAGATGATGATCTTCACAAAGCTATTGAAAAAGCTAGAAAATTGGCTCTGAAAAAGCAGAAAGATGCTCCAGTTGGTCCTGAA GCTATCGCTCGTCTTGCAACCACCCTTAAGACAAATCAGATGACCGATGATCAAAATGGGGCCACAGACGAAGGACAAGAAGGCAGGGTTGTCTTCACTG AGATTGAAGAGTTTGTCTGGGGCTTGCAGTTTGATGAAGACGCCAATAAATCTGATACAGAAGATGTATTTGAAGAGGAAAATGATGCTACAGCAGCTAT TCATGAGGAGAGAGAAGATACGGCTGATGGGTTGACAGAAGCAAATGAGACGGTTAAAGATGAAGACACTACCATGGAAGATGCGAAAGAGGTCACTGCA GCAGACGAGACCATTCATGAAGTTCCTGTTGGTAAAGGATTATCAGGCGCATTAAAGCTACTTCATGAGCGAGGGACACTGAAAGAAAGCATCAACTGGG GTGGTCGAAATATGGACAAGAAAAAGAGCAAGCTTGTTGGTATTGTAGACACCGACGATGGGAAAAAGAAGGAGAATAATAAAGACAAGGATATGGATAG ATTCAAAGATATTCGTATCGAGAGGATGGACGAATTTGGCCGAATCATGACTCCAAAAGAGGCCTTCAGGATAATCTCTCATAGATTCCATGGCAAGGGA CCTGGGAAAATGAAGCAAGAGAAGCGCATGAAGCAGTATCAGGAGGAACTAAAGCTGAAGCAAATGAAGAATTCAGATACACCTTCGTTATCCGTGGAGA GGATGAGGGAAACTCAGGCGCAGCTAAAGACTCCATACCTCGTTCTTAGCGGTCATGTGAAACCTGGGCAAATGAGCGATCCGAGGAGTGGTTTCGCAAC GGTGGAGAAGGACTTTCCAGGGGGATTGACTCCGATGCTTGGTGATAAAAAGGTTGAGCATTTCCTGGGGATAAAACGAAAGCTTGATGCTGGGAGTGAC AGCAGCACACCAAAGAAGCCCAGACCATGA
AA sequence Show only first row Show all	>Lus10000639 pacid=23175092 polypeptide=Lus10000639 locus=Lus10000639.g ID=Lus10000639.BGIv1.0 annot-version=v1.0 MDKKHYESRHDRREELVDRDDSPRPVDEDMGLNGVEKSSKHDSRNKDRKKRSRAEDKERDRDKDHRYKDRERSKKTSDDVSTDLDKEHLKYNEQGKDRIK DIKGKDKDHDRDRSREKERDKDKERKDRGKDKERDRGRETDKERGKEKNRDREIAKDKEREKENQKLKDLEKLRENDKDGDRKRGRENAKERELDQGKER SRERDGTSKEDRQDDPEWSKMLMGQEYDGHKDVLTSSFDGDQKNAERSFTGGQTSTSELRERIMKMKEERTSKSEASSEILSWVNKTRKLEEKRNIAREK AKWLSKNFEEQDNLGQGGSDDEEAAQNHTHDLAGVKVLDGLDKVIEGGSVVLTLKDQSILADGDINNEVDMLENIEIGEQKRRDDAYKAAKKPAGIYSED RFNDDPMAEKKMLPQYDEPVDEGVTLDNRGHFSGEAEKKLEELRKRLQGGSTNNHTEDLNSSGKILSDYYSQEEMIQFKKPKKKKSLRKKDKLDIKALEE EAIAEGLGAGDLGSRNDGRRKAREEQERHEAELRTAAYQLALAKADEASKALRLGHTNPVSKEDIDDVMVDEEDDDLHKAIEKARKLALKKQKDAPVGPE AIARLATTLKTNQMTDDQNGATDEGQEGRVVFTEIEEFVWGLQFDEDANKSDTEDVFEEENDATAAIHEEREDTADGLTEANETVKDEDTTMEDAKEVTA ADETIHEVPVGKGLSGALKLLHERGTLKESINWGGRNMDKKKSKLVGIVDTDDGKKKENNKDKDMDRFKDIRIERMDEFGRIMTPKEAFRIISHRFHGKG PGKMKQEKRMKQYQEELKLKQMKNSDTPSLSVERMRETQAQLKTPYLVLSGHVKPGQMSDPRSGFATVEKDFPGGLTPMLGDKKVEHFLGIKRKLDAGSD SSTPKKPRP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G16780		MDF, DOT2	MERISTEM-DEFECTIVE, DEFECTIVEL...		Lus10000639 [exp]	0	1
AT3G09670			Tudor/PWWP/MBT superfamily pro...		Lus10012010 [exp]	3.2	0.8357
AT5G16780		MDF, DOT2	MERISTEM-DEFECTIVE, DEFECTIVEL...		Lus10023155 [exp]	4.0	0.8280
AT5G16780		MDF, DOT2	MERISTEM-DEFECTIVE, DEFECTIVEL...		Lus10000285 [exp]	4.2	0.8847
AT5G05210			Surfeit locus protein 6 (.1.2)		Lus10014455 [exp]	6.5	0.8805
AT1G05600		EMB3101	EMBRYO DEFECTIVE 3101, Tetratr...		Lus10002681 [exp]	10.2	0.8071
AT5G22080			Chaperone DnaJ-domain superfam...		Lus10004099 [exp]	15.8	0.8485
AT5G58040		FIP1[V], ATFIP1...	homolog of yeast FIP1 [V], hom...		Lus10019609 [exp]	17.8	0.8313
AT5G47090			unknown protein		Lus10035063 [exp]	25.1	0.8389
AT5G27720		LSM4, EMB1644	SM-like protein 4, embryo defe...		Lus10004221 [exp]	26.4	0.8208
AT5G08450			unknown protein		Lus10004299 [exp]	27.1	0.7903

Compare expression of checked genes

Lus10000639 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.