Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G28200 333 / 5e-116 FIP1 FH interacting protein 1 (.1) AT2G22475 297 / 4e-101 GEM GL2-EXPRESSION MODULATOR, GRAM domain family protein (.1.2) AT4G40100 212 / 1e-68 GRAM domain family protein (.1) AT5G13200 185 / 2e-57 GRAM domain family protein (.1) AT4G01600 161 / 2e-48 GRAM domain family protein (.1.2) AT5G23350 125 / 5e-34 GRAM domain-containing protein / ABA-responsive protein-related (.1) AT5G08350 121 / 2e-33 GRAM domain-containing protein / ABA-responsive protein-related (.1) AT5G23370 121 / 3e-33 GRAM domain-containing protein / ABA-responsive protein-related (.1) AT5G23360 120 / 5e-33 GRAM domain-containing protein / ABA-responsive protein-related (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040539 [exp] 531 / 0 AT1G28200 338 / 6e-118 FH interacting protein 1 (.1) Lus10025728 [exp] 278 / 4e-93 AT2G22475 304 / 4e-103 GL2-EXPRESSION MODULATOR, GRAM domain family protein (.1.2) Lus10035933 [exp] 245 / 4e-79 AT2G22475 265 / 1e-86 GL2-EXPRESSION MODULATOR, GRAM domain family protein (.1.2) Lus10010279 [exp] 191 / 5e-60 AT2G22475 196 / 3e-62 GL2-EXPRESSION MODULATOR, GRAM domain family protein (.1.2) Lus10031986 [exp] 192 / 7e-60 AT5G13200 302 / 3e-103 GRAM domain family protein (.1) Lus10035154 [exp] 189 / 9e-59 AT5G13200 308 / 9e-106 GRAM domain family protein (.1) Lus10017372 [exp] 146 / 7e-43 AT5G08350 238 / 2e-79 GRAM domain-containing protein / ABA-responsive protein-related (.1) Lus10010166 [exp] 144 / 7e-42 AT5G08350 233 / 1e-77 GRAM domain-containing protein / ABA-responsive protein-related (.1) Lus10013445 [exp] 139 / 9e-40 AT5G08350 246 / 1e-82 GRAM domain-containing protein / ABA-responsive protein-related (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G159100 [exp] 385 / 1e-135 AT1G28200 295 / 2e-100 FH interacting protein 1 (.1) Potri.002G102800 [exp] 382 / 8e-135 AT1G28200 325 / 3e-112 FH interacting protein 1 (.1) Potri.002G184100 [exp] 216 / 1e-70 AT1G28200 219 / 7e-72 FH interacting protein 1 (.1) Potri.014G109700 [exp] 210 / 1e-67 AT1G28200 221 / 1e-72 FH interacting protein 1 (.1) Potri.003G165400 [exp] 195 / 5e-61 AT5G13200 350 / 6e-122 GRAM domain family protein (.1) Potri.003G165700 [exp] 192 / 6e-60 AT5G13200 326 / 1e-112 GRAM domain family protein (.1) Potri.003G165500 [exp] 186 / 1e-57 AT5G13200 328 / 3e-113 GRAM domain family protein (.1) Potri.003G165600 [exp] 186 / 2e-57 AT5G13200 323 / 1e-111 GRAM domain family protein (.1) Potri.001G323300 [exp] 177 / 2e-54 AT5G13200 290 / 2e-98 GRAM domain family protein (.1) Potri.007G075700 [exp] 149 / 4e-44 AT5G08350 240 / 3e-80 GRAM domain-containing protein / ABA-responsive protein-related (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0266 [flax] [poplar] PH PF02893 [flax] [poplar] GRAM GRAM domain
Representative CDS sequence Show only first row Show all	>Lus10000640 pacid=23139768 polypeptide=Lus10000640 locus=Lus10000640.g ID=Lus10000640.BGIv1.0 annot-version=v1.0 ATGGCTGAGAATCAGCATCCTCTTCCACCGCAGCAGCAGCACCTTGATCAATCCGCCATTAAAACCCCAACTTCGGAATCCAATACCTCAGACTACGCGC CCTACCCTAAGCTCGATCCTCAAGACGTCACACCCCCTTCTGAGAATTGGGCTGACGTCTCCATGGCTGGCTCCGTTCCTCCTCCATCTCAGTCTCACGC TGCCGCTCCCGGTCCTACTCCGATCCCTGGCGATCATGCTACTACTATGCCACCTGAATCCAATCCCTATGTGTCCCCTGCGCCCGCCTCTAAGAACAAG ATGGATGCATTGAAAGACGTGCTAGGTAAATGGGGGAAGAAGGCTGCTGAGGCTACCAAGATGGCCGAGGATCTTGCTGGCAACATGTGGCAACACTTGA AGACGGGGCCTAGCTTTGCTGATGCTGCTGTTGGAAGGATTGCCCAATCCACCAAGGTGCTTGCAGAAGGTGGTTATGAGAAGGTTTTCAAACAGACGTT TGAGAGTATTCCTGATGAACAACTTACTAAGACCTATGCGTGCTACCTCTCAACCTCTGCTGGTCCTGTCATGGGGACTTTATACTTTTCTACTGCAAAG CTTGGATTTTGTAGTGATAATCCTCTCTCATACAATGTTGCTGATCAAACTCAATGGAGCTATTACAAGGTTGTTATTCCCTTGCATCAACTGAAGGCTG TGAATCCATCAACAAGCAAGCTGAACACGTCTGAGAAGTATATCCAGATAATCTCTATAGACAACCATGAATTCTGGTTCATGGGTTTTGTCAACTATGA GAGTGCAGTGAAAAATCTTCAAGGAGCCGTCCCTCATCCTATCTAG
AA sequence Show only first row Show all	>Lus10000640 pacid=23139768 polypeptide=Lus10000640 locus=Lus10000640.g ID=Lus10000640.BGIv1.0 annot-version=v1.0 MAENQHPLPPQQQHLDQSAIKTPTSESNTSDYAPYPKLDPQDVTPPSENWADVSMAGSVPPPSQSHAAAPGPTPIPGDHATTMPPESNPYVSPAPASKNK MDALKDVLGKWGKKAAEATKMAEDLAGNMWQHLKTGPSFADAAVGRIAQSTKVLAEGGYEKVFKQTFESIPDEQLTKTYACYLSTSAGPVMGTLYFSTAK LGFCSDNPLSYNVADQTQWSYYKVVIPLHQLKAVNPSTSKLNTSEKYIQIISIDNHEFWFMGFVNYESAVKNLQGAVPHPI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G28200		FIP1	FH interacting protein 1 (.1)		Lus10000640 [exp]	0	1
AT1G78310			VQ motif-containing protein (....		Lus10036480 [exp]	2.2	0.9235
AT2G31880		SOBIR1, EVR	SUPPRESSOR OF BIR1 1, EVERSHED...		Lus10017963 [exp]	3.2	0.9038
AT5G14540			Protein of unknown function (D...		Lus10032138 [exp]	5.7	0.9014
AT3G24550		ATPERK1	proline-rich extensin-like rec...		Lus10011098 [exp]	5.7	0.9045
AT5G65200		ATPUB38	ARABIDOPSIS THALIANA PLANT U-B...		Lus10034119 [exp]	5.8	0.8856
AT1G21380			Target of Myb protein 1 (.1)		Lus10029739 [exp]	7.5	0.9126
AT5G16880			Target of Myb protein 1 (.1.2....		Lus10005924 [exp]	7.9	0.9041
AT5G44860			unknown protein		Lus10036220 [exp]	9.3	0.8886
AT5G53560		B5#2, ATB5-A, A...	ARABIDOPSIS CYTOCHROME B5 ISOF...		Lus10008838 [exp]	10.7	0.9223
AT2G03430			Ankyrin repeat family protein ...		Lus10037116 [exp]	11.4	0.9001

Compare expression of checked genes

Lus10000640 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.