Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G24764 316 / 1e-102 ATMAP70-2 microtubule-associated proteins 70-2 (.1) AT1G68060 303 / 4e-98 ATMAP70-1 microtubule-associated proteins 70-1 (.1) AT1G14840 296 / 2e-95 ATMAP70-4 microtubule-associated proteins 70-4 (.1.2) AT2G01750 285 / 8e-91 ATMAP70-3 microtubule-associated proteins 70-3 (.1.2) AT4G17220 165 / 2e-46 ATMAP70-5 microtubule-associated proteins 70-5 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013238 [exp] 377 / 1e-126 AT1G24764 910 / 0.0 microtubule-associated proteins 70-2 (.1) Lus10030758 [exp] 375 / 1e-125 AT1G24764 918 / 0.0 microtubule-associated proteins 70-2 (.1) Lus10019171 [exp] 337 / 2e-113 AT1G24764 546 / 0.0 microtubule-associated proteins 70-2 (.1) Lus10038790 [exp] 181 / 7e-52 AT4G17220 473 / 5e-163 microtubule-associated proteins 70-5 (.1) Lus10003908 [exp] 39 / 0.0006 AT4G17220 98 / 3e-25 microtubule-associated proteins 70-5 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G106100 [exp] 352 / 8e-117 AT1G68060 751 / 0.0 microtubule-associated proteins 70-1 (.1) Potri.008G135100 [exp] 348 / 3e-115 AT1G24764 804 / 0.0 microtubule-associated proteins 70-2 (.1) Potri.006G039200 [exp] 277 / 6e-88 AT1G24764 648 / 0.0 microtubule-associated proteins 70-2 (.1) Potri.016G036300 [exp] 267 / 3e-84 AT1G68060 619 / 0.0 microtubule-associated proteins 70-1 (.1) Potri.016G006900 [exp] 164 / 8e-46 AT4G17220 453 / 1e-154 microtubule-associated proteins 70-5 (.1) Potri.006G018000 [exp] 144 / 2e-38 AT4G17220 464 / 5e-159 microtubule-associated proteins 70-5 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF07058 [flax] [poplar] MAP70 Microtubule-associated protein 70
Representative CDS sequence Show only first row Show all	>Lus10000642 pacid=23181634 polypeptide=Lus10000642 locus=Lus10000642.g ID=Lus10000642.BGIv1.0 annot-version=v1.0 ATGCGAAGCATTTTTACATCTTCAAGAAGCTTGGATTTCGACTTGGTCCGTCTCACCAAGTCGAAAGAAGCTGCCTTGCTTGAAGCTGAGAGGACTGTTC AGGTTGCAATGGCTAAGGCCTCTATGGTGGATGACCTCCTAAATAAGAACCAGGAATTGATGAAGCATATAGAAATATGCCAGGAAGAAAACAAGATTTT GGACAAAATGCATAGACAACAGGTTGCGGAGGTTGAAAAACTTACGCAAACTGTTAGGGAACTGGAGGAGGCTGTCCTTGCTGATGGTGCTGCAGCCAAT GCTGTGAGGGATTACCAGCGGGGAGTTAAAGAGTTGAATGAGGAAAAGAAAATGTTAGAACGAGAATTGGCTCGGGCGAAGGTAAATGCTAACCGGGTTG CAACAGTAGTAGCAAATGAGTGGAAGGATTCTAACGACAAAGTGATGCCTGGAGATATGCAGCAACTTCGGGAAAAACTCACCATAGCTGAGCGAACCGC AAAATCTGAAGCACAGCTGAAAGAGAAGTATCAGTTACGACTTAAAGTTCTGGAAGAGACCTTGAGAGGGTCTTCAAGCTGCAGTCGTAGTGCATCAGAT GGGAGGAGTGCGAAGATCGCCGTCCTCCATAAGAGCTTTGTCTTCAGTACTAGTGCTGTCCTGAAGCATGCTAAAGGGATATCCAAATCGTTTGATGGCG GCACAAGATCACTTGATAGAGGTAGCAAAGTTCTCCTGAACGGAGGTAGCCCGAATTCCTCATTCGACCAGCCTTCAGCGGTTTCAAACGATACATTGGT TTCAAATCCAGATGATAAGCCAACTGACTTTCCACCGGCAGATAAAGAAGATAGTGTTCCTGAAATGTTGTATGATTTGTTGCAAAGAGAGGTCGTTGCT TTGAGGAAAGCCGGTAATGAAAAAGATCAAAGCCTCAAGGATAAGGATGATGGGATCGAGGTTAAACACTTAACCTCCCCGTCTTTTCTTTTCATCGGTA TTCATATACTTTGTCGATACGCACAAATGGGTTTTCCAGATGTTAGCAAAGAAGGTAGAAACGTAGACAAACGCTATGGAGGTTGA
AA sequence Show only first row Show all	>Lus10000642 pacid=23181634 polypeptide=Lus10000642 locus=Lus10000642.g ID=Lus10000642.BGIv1.0 annot-version=v1.0 MRSIFTSSRSLDFDLVRLTKSKEAALLEAERTVQVAMAKASMVDDLLNKNQELMKHIEICQEENKILDKMHRQQVAEVEKLTQTVRELEEAVLADGAAAN AVRDYQRGVKELNEEKKMLERELARAKVNANRVATVVANEWKDSNDKVMPGDMQQLREKLTIAERTAKSEAQLKEKYQLRLKVLEETLRGSSSCSRSASD GRSAKIAVLHKSFVFSTSAVLKHAKGISKSFDGGTRSLDRGSKVLLNGGSPNSSFDQPSAVSNDTLVSNPDDKPTDFPPADKEDSVPEMLYDLLQREVVA LRKAGNEKDQSLKDKDDGIEVKHLTSPSFLFIGIHILCRYAQMGFPDVSKEGRNVDKRYGG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G24764		ATMAP70-2	microtubule-associated protein...		Lus10000642 [exp]	0	1
AT4G27960		UBC9	ubiquitin conjugating enzyme 9...		Lus10005072 [exp]	7.1	0.9034
AT5G16000		NIK1	NSP-interacting kinase 1 (.1)		Lus10019145 [exp]	9.3	0.8912
AT3G10910			RING/U-box superfamily protein...		Lus10029037 [exp]	11.5	0.8854
AT2G35940	HD	BLH1, EDA29	embryo sac development arrest ...		Lus10004201 [exp]	11.8	0.8800
AT3G60720		PDLP8	plasmodesmata-located protein ...		Lus10010362 [exp]	13.1	0.9027
AT2G23700			Protein of unknown function, D...		Lus10040507 [exp]	13.6	0.8568
AT5G55050			GDSL-like Lipase/Acylhydrolase...		Lus10040064 [exp]	15.2	0.8760
					Lus10016958 [exp]	20.2	0.8755
AT4G16360			5'-AMP-activated protein kinas...		Lus10012343 [exp]	20.4	0.8533
AT1G75250	MYB	RSM3, ATRL6	RADIALIS-LIKE SANT/MYB 3, RAD-...		Lus10026009 [exp]	21.8	0.8757

Compare expression of checked genes

Lus10000642 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.