Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G69170 188 / 1e-53 SBP SPL6 Squamosa promoter-binding protein-like (SBP domain) transcription factor family protein (.1) AT3G29630 141 / 2e-36 UDP-Glycosyltransferase superfamily protein (.1) AT1G64910 138 / 3e-35 UDP-Glycosyltransferase superfamily protein (.1) AT5G53990 137 / 5e-35 UDP-Glycosyltransferase superfamily protein (.1) AT4G27570 135 / 5e-34 UDP-Glycosyltransferase superfamily protein (.1) AT1G02065 132 / 5e-34 SBP SPL8 squamosa promoter binding protein-like 8 (.1.2) AT4G27560 134 / 1e-33 UDP-Glycosyltransferase superfamily protein (.1) AT5G54010 134 / 1e-33 UDP-Glycosyltransferase superfamily protein (.1) AT1G64920 133 / 2e-33 UDP-Glycosyltransferase superfamily protein (.1) AT5G43270 132 / 3e-33 SBP SPL2 squamosa promoter binding protein-like 2 (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036812 [exp] 769 / 0 AT1G69170 186 / 2e-54 Squamosa promoter-binding protein-like (SBP domain) transcription factor family protein (.1) Lus10021141 [exp] 164 / 1e-43 AT1G69170 168 / 9e-47 Squamosa promoter-binding protein-like (SBP domain) transcription factor family protein (.1) Lus10007984 [exp] 159 / 5e-42 AT1G69170 167 / 2e-46 Squamosa promoter-binding protein-like (SBP domain) transcription factor family protein (.1) Lus10040178 [exp] 158 / 6e-42 AT5G54010 437 / 7e-151 UDP-Glycosyltransferase superfamily protein (.1) Lus10004381 [exp] 157 / 1e-41 AT5G54060 437 / 1e-150 UDP-glucose:flavonoid 3-o-glucosyltransferase (.1) Lus10023818 [exp] 140 / 1e-36 AT2G42200 191 / 3e-57 squamosa promoter binding protein-like 9 (.1) Lus10021614 [exp] 141 / 2e-36 AT5G43270 192 / 9e-57 squamosa promoter binding protein-like 2 (.1.2.3) Lus10021034 [exp] 139 / 7e-36 AT2G42200 199 / 2e-60 squamosa promoter binding protein-like 9 (.1) Lus10013337 [exp] 140 / 8e-36 AT5G54010 452 / 1e-156 UDP-Glycosyltransferase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G097900 [exp] 273 / 2e-84 AT1G69170 169 / 2e-47 Squamosa promoter-binding protein-like (SBP domain) transcription factor family protein (.1) Potri.010G154300 [exp] 216 / 3e-63 AT1G69170 152 / 3e-41 Squamosa promoter-binding protein-like (SBP domain) transcription factor family protein (.1) Potri.015G060400 [exp] 174 / 4e-47 AT1G69170 153 / 4e-41 Squamosa promoter-binding protein-like (SBP domain) transcription factor family protein (.1) Potri.015G098900 [exp] 140 / 2e-36 AT5G50570 233 / 1e-73 SQUAMOSA PROMOTER-BINDING PROTEIN LIKE 13, Squamosa promoter-binding protein-like (SBP domain) transcription factor family protein (.1), Squamosa promoter-binding protein-like (SBP domain) transcription factor family protein (.2) Potri.012G100700 [exp] 138 / 3e-36 AT5G50570 222 / 6e-70 SQUAMOSA PROMOTER-BINDING PROTEIN LIKE 13, Squamosa promoter-binding protein-like (SBP domain) transcription factor family protein (.1), Squamosa promoter-binding protein-like (SBP domain) transcription factor family protein (.2) Potri.011G097900 [exp] 141 / 4e-36 AT5G54010 498 / 1e-174 UDP-Glycosyltransferase superfamily protein (.1) Potri.016G048500 [exp] 129 / 3e-32 AT2G42200 217 / 3e-67 squamosa promoter binding protein-like 9 (.1) Potri.001G058600 [exp] 128 / 4e-32 AT5G50570 164 / 3e-47 SQUAMOSA PROMOTER-BINDING PROTEIN LIKE 13, Squamosa promoter-binding protein-like (SBP domain) transcription factor family protein (.1), Squamosa promoter-binding protein-like (SBP domain) transcription factor family protein (.2) Potri.014G057700 [exp] 126 / 8e-32 AT1G02065 247 / 3e-80 squamosa promoter binding protein-like 8 (.1.2) Potri.018G149900 [exp] 128 / 1e-31 AT5G43270 187 / 1e-54 squamosa promoter binding protein-like 2 (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03110 [flax] [poplar] SBP SBP domain CL0113 [flax] [poplar] GT-B PF00201 [flax] [poplar] UDPGT UDP-glucoronosyl and UDP-glucosyl transferase
Representative CDS sequence Show only first row Show all	>Lus10000643 pacid=23181633 polypeptide=Lus10000643 locus=Lus10000643.g ID=Lus10000643.BGIv1.0 annot-version=v1.0 ATGGAAATTTTACTGGGATTCGAGCTATGCGGCAGGCCATTCATAGTAGCGACGACGAAGCTGCCGCGAGGGTGCTCATCGCTCCCGGCGGGTTATGCGG CGAGGGTTGAAGGAATGGGAGTGGTCCACTATGGGTGGGTCCCGCAGGTAGAGATTCTGGAGCATGAGTGGGTGGGTTGCTTTGTGAGCCACTGTGGGAG CAGTTCAATGTGGGAGGCTCTGGCAAGTGAGTGTAAGATTGTGTTGATGCCGAACATTGTTTTGCAGTCGGCGACGGCGATGTTCATGGCGGAGGAGCTG AAAGTGGCAGTGGAAGTTGAGGACAGCGGTGGGTGGATTGATAAGGAGGAGTTGAGCAGAACTATTGGCACGGCGATGGATGAAGAGAGTGAAGTTGGTA ATTTGTTGCTGAGGAATCATTCTTACACTGATGATTTCGTTTCCAAGCTGTGTGCTCTTGTGGGAACTGGGATCTTCTTTGCAAAGTGTTCTTCAGCTTT CTGCTTGGTTGTTGGTAGTATGACGGAGCCATGGAGTTATGCTCCAGAAAGGAAAGCTAGTTTCTTCACCAGCCATGAAGTAGATTTTCCAGCTGATATT GATAGCCTGGAGTTTGTTGATCTAGGGTTTCATGATGATGTCCTAAGAAGTCCTTGCTTTGCTGGTGGTGGTAGTAGTGATGAGGTTGGTGGTTTTGATT CTCATAACTTCGCTGCTGCTTCAAACTCCCCGTTGGATTCTGGATCGATCGAACATTCGAGTTCGCTAGTGGAGTCCAACATCCTGGATTCGTCATTTAT CATCGATTTGAATCTGGGTCGGTTTGCTGAGAATGGTGGTGAGTTTTGCCAGAAGAGGTCACTGCTGGACTTTGCGGAGCCCGGCTTTCAAGCGAAGAGA GCTCGAATCGTGACTCCATTGTGCCAAGTCTATGGCTGTAACAAGGATCTTAGCTTGTTGAAGGATTATCACAAGAGGCATAGAGTTTGTGAGGTCCACA CTAAGACTCCTAATGTGGTTGTTAATGGGATTCAACAGAGGTTTTGTCAACAGTGCAGCAGGTTCCATCTTCTATCGGAGTTTGACGATGGCAAGCGTAG CTGTCGAAAACGCCTAGCTGGCCACAACGAGCGGAGGAGGAAGCCTCATTTCGGTGGCCTCTCTAGCAATGGCTACAAGTTACTGCAACAATATCAAGCG GAAGGCGCTAGTTTTCTTGCTCCTTTGCCTAAGAGATCGTCATTTCTGTTCCAAGATATGCTCACAGTACCACATCGTAATCTGCGTACCGAAACTAACT GGTACAGTCATTCTTTGTTCAAGGAAAGGTCGTGTTGCAACACCGAGACAGCATATCCATATAATGACCAGTGGCTGTCAACAAGTCCAGTCTCTTACCA CCACGGCAATGGTTCGAACCATCACTCTAGCCGTGCTCTCTCTCTTCTGTCAGATGAATCTCAGCACTACTTCAGCAGCCATGGTTCACTAAGAGGATAT CCAATGGCTAAGCCCTTCCCCAGCTTAGGTTCATTTGGCAAATACGAGTTCTGCTCATGTCGAACGAATCCCATCCATGTCAACCATCATCTTGAACATG ATGCCGCTGAGTTTCACAGGAAAAGAAATGGACTTTTCCCTCCTCACAACATCCCAGATCCAGACTCGAAAAGGAATAACCGCGGCTCTCCTGAAAACGA ACGTACAGTCGATTTGCTTCAGCTTTCGTCGCATCTTCAACGAGTTGAACAGCAGAGGAGCCTCGTACAAATGAAGAACGAGACCGAGGATCTGTTTCAT TTCCTCACTACTGAAGGACTAAGAGTGTGA
AA sequence Show only first row Show all	>Lus10000643 pacid=23181633 polypeptide=Lus10000643 locus=Lus10000643.g ID=Lus10000643.BGIv1.0 annot-version=v1.0 MEILLGFELCGRPFIVATTKLPRGCSSLPAGYAARVEGMGVVHYGWVPQVEILEHEWVGCFVSHCGSSSMWEALASECKIVLMPNIVLQSATAMFMAEEL KVAVEVEDSGGWIDKEELSRTIGTAMDEESEVGNLLLRNHSYTDDFVSKLCALVGTGIFFAKCSSAFCLVVGSMTEPWSYAPERKASFFTSHEVDFPADI DSLEFVDLGFHDDVLRSPCFAGGGSSDEVGGFDSHNFAAASNSPLDSGSIEHSSSLVESNILDSSFIIDLNLGRFAENGGEFCQKRSLLDFAEPGFQAKR ARIVTPLCQVYGCNKDLSLLKDYHKRHRVCEVHTKTPNVVVNGIQQRFCQQCSRFHLLSEFDDGKRSCRKRLAGHNERRRKPHFGGLSSNGYKLLQQYQA EGASFLAPLPKRSSFLFQDMLTVPHRNLRTETNWYSHSLFKERSCCNTETAYPYNDQWLSTSPVSYHHGNGSNHHSSRALSLLSDESQHYFSSHGSLRGY PMAKPFPSLGSFGKYEFCSCRTNPIHVNHHLEHDAAEFHRKRNGLFPPHNIPDPDSKRNNRGSPENERTVDLLQLSSHLQRVEQQRSLVQMKNETEDLFH FLTTEGLRV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G69170	SBP	SPL6	Squamosa promoter-binding prot...		Lus10000643 [exp]	0	1
AT5G16500			Protein kinase superfamily pro...		Lus10020383 [exp]	6.5	0.8342
AT3G16350	MYB		Homeodomain-like superfamily p...		Lus10025822 [exp]	6.9	0.8109
AT2G42690			alpha/beta-Hydrolases superfam...		Lus10017975 [exp]	9.3	0.8142
AT4G35290		ATGLUR2, ATGLR3...	GLUTAMATE RECEPTOR 3.2, glutam...		Lus10026552 [exp]	10.2	0.7793
AT2G36810			ARM repeat superfamily protein...		Lus10023895 [exp]	18.1	0.7821
AT1G23820		SPDS1	spermidine synthase 1 (.1.2)		Lus10012996 [exp]	20.2	0.8087
AT1G78700	BZR	BEH4	BES1/BZR1 homolog 4 (.1)		Lus10029270 [exp]	22.9	0.7500
AT1G67790			unknown protein		Lus10034566 [exp]	28.9	0.7860
AT2G25930		PYK20, ELF3	EARLY FLOWERING 3, hydroxyprol...		Lus10007459 [exp]	29.2	0.7239
AT5G36930			Disease resistance protein (TI...		Lus10007790 [exp]	30.0	0.7885

Compare expression of checked genes

Lus10000643 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.