Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G69180 168 / 3e-53 YABBY CRC CRABS CLAW, Plant-specific transcription factor YABBY family protein (.1) AT2G45190 127 / 7e-37 YABBY FIL, YAB1, AFO YABBY1, FILAMENTOUS FLOWER, ABNORMAL FLORAL ORGANS, Plant-specific transcription factor YABBY family protein (.1) AT1G08465 115 / 1e-32 YABBY YAB2 YABBY2, Plant-specific transcription factor YABBY family protein (.1) AT2G26580 114 / 1e-32 YABBY YAB5 YABBY5, plant-specific transcription factor YABBY family protein (.1.2) AT1G23420 92 / 5e-23 YABBY INO, YAB4 INNER NO OUTER, Plant-specific transcription factor YABBY family protein (.1) AT4G00180 71 / 2e-15 YABBY YAB3 YABBY3, Plant-specific transcription factor YABBY family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036811 [exp] 246 / 4e-84 AT1G69180 187 / 4e-61 CRABS CLAW, Plant-specific transcription factor YABBY family protein (.1) Lus10024603 [exp] 116 / 4e-32 AT2G45190 190 / 2e-60 YABBY1, FILAMENTOUS FLOWER, ABNORMAL FLORAL ORGANS, Plant-specific transcription factor YABBY family protein (.1) Lus10032240 [exp] 108 / 3e-29 AT2G45190 193 / 1e-61 YABBY1, FILAMENTOUS FLOWER, ABNORMAL FLORAL ORGANS, Plant-specific transcription factor YABBY family protein (.1) Lus10019407 [exp] 107 / 4e-29 AT2G26580 228 / 8e-77 YABBY5, plant-specific transcription factor YABBY family protein (.1.2) Lus10043264 [exp] 107 / 3e-27 AT5G35410 630 / 0.0 SNF1-RELATED PROTEIN KINASE 3.11, CBL-INTERACTING PROTEIN KINASE 24, SALT OVERLY SENSITIVE 2, Protein kinase superfamily protein (.1) Lus10030105 [exp] 96 / 1e-23 AT2G26580 172 / 3e-53 YABBY5, plant-specific transcription factor YABBY family protein (.1.2) Lus10029135 [exp] 92 / 3e-23 AT1G23420 200 / 9e-65 INNER NO OUTER, Plant-specific transcription factor YABBY family protein (.1) Lus10013028 [exp] 89 / 5e-22 AT1G23420 193 / 4e-62 INNER NO OUTER, Plant-specific transcription factor YABBY family protein (.1) Lus10010361 [exp] 86 / 3e-20 AT2G45190 171 / 4e-53 YABBY1, FILAMENTOUS FLOWER, ABNORMAL FLORAL ORGANS, Plant-specific transcription factor YABBY family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G097800 [exp] 198 / 3e-65 AT1G69180 157 / 3e-49 CRABS CLAW, Plant-specific transcription factor YABBY family protein (.1) Potri.010G154350 [exp] 196 / 4e-64 AT1G69180 155 / 2e-48 CRABS CLAW, Plant-specific transcription factor YABBY family protein (.1) Potri.014G066700 [exp] 123 / 2e-35 AT2G45190 277 / 3e-95 YABBY1, FILAMENTOUS FLOWER, ABNORMAL FLORAL ORGANS, Plant-specific transcription factor YABBY family protein (.1) Potri.018G129800 [exp] 122 / 2e-35 AT2G26580 250 / 5e-86 YABBY5, plant-specific transcription factor YABBY family protein (.1.2) Potri.001G120200 [exp] 123 / 3e-35 AT2G45190 236 / 4e-79 YABBY1, FILAMENTOUS FLOWER, ABNORMAL FLORAL ORGANS, Plant-specific transcription factor YABBY family protein (.1) Potri.009G000100 [exp] 120 / 6e-35 AT1G08465 215 / 3e-72 YABBY2, Plant-specific transcription factor YABBY family protein (.1) Potri.006G067800 [exp] 117 / 2e-33 AT2G26580 253 / 5e-87 YABBY5, plant-specific transcription factor YABBY family protein (.1.2) Potri.003G112800 [exp] 117 / 4e-33 AT2G45190 243 / 1e-81 YABBY1, FILAMENTOUS FLOWER, ABNORMAL FLORAL ORGANS, Plant-specific transcription factor YABBY family protein (.1) Potri.002G145100 [exp] 117 / 5e-33 AT2G45190 265 / 2e-90 YABBY1, FILAMENTOUS FLOWER, ABNORMAL FLORAL ORGANS, Plant-specific transcription factor YABBY family protein (.1) Potri.016G067300 [exp] 100 / 6e-27 AT1G08465 150 / 2e-46 YABBY2, Plant-specific transcription factor YABBY family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0114 [flax] [poplar] HMG-box PF04690 [flax] [poplar] YABBY YABBY protein
Representative CDS sequence Show only first row Show all	>Lus10000644 pacid=23181635 polypeptide=Lus10000644 locus=Lus10000644.g ID=Lus10000644.BGIv1.0 annot-version=v1.0 ATGAACATGAACCAGCAGCAGCAGCAGGAAGAGAAAGTGACGATGGACCTGATCCCGCCCTCCGACCACCTCTGCTACGTCCGATGCAACTTCTGCAACA CGGTCCTGGCTGTCGGGATACCGTACAAGAGGCTCCTCGACACCGTCACCGTCAAGTGCGGACACTGCAGCAACCTCTCCTTCCTCAGCACTCGCCCTCC TCTCCAAGGCCAGTGCCTCAACGACCACCAGTACCCCCACCTCTCCCTTCAGGAGAAGCAGCCTGGAGGAGGAGGTGGAGGAGGTGGAGGTGGGTCAACT GGGTTTTGCAGTGAGTTCAAGAAGCTCGGTCAATCGTCGTCGTCTTCTTCCTCCTCTACTGATCAGCCGCTCTCTCCCAAGGCTCCCTTCGTAGTCAAAC CGCCGGAGAAGAAACACCGGCTTCCGTCTGCTTACAACCGCTTCATGAGGGAGGAGATCCAAAGGATCAAGTCTGCAAACCCTGAGATACCACACAGGGA GGCCTTCAGTGCTGCTGCCAAAAATGTATGCTCCCATCTTTTTTGTTTAGTAACCATAAAATCGAAACCGGGTTAA
AA sequence Show only first row Show all	>Lus10000644 pacid=23181635 polypeptide=Lus10000644 locus=Lus10000644.g ID=Lus10000644.BGIv1.0 annot-version=v1.0 MNMNQQQQQEEKVTMDLIPPSDHLCYVRCNFCNTVLAVGIPYKRLLDTVTVKCGHCSNLSFLSTRPPLQGQCLNDHQYPHLSLQEKQPGGGGGGGGGGST GFCSEFKKLGQSSSSSSSSTDQPLSPKAPFVVKPPEKKHRLPSAYNRFMREEIQRIKSANPEIPHREAFSAAAKNVCSHLFCLVTIKSKPG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G69180	YABBY	CRC	CRABS CLAW, Plant-specific tra...		Lus10000644 [exp]	0	1

Compare expression of checked genes

Lus10000644 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.