Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G26330 284 / 4e-79 DNA binding (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036969 [exp] 262 / 3e-75 AT1G78270 190 / 3e-53 UDP-glucosyl transferase 85A4 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G097700 [exp] 391 / 3e-116 AT1G26330 444 / 3e-135 DNA binding (.1.2) Potri.002G232800 [exp] 52 / 4e-06 AT1G05830 1261 / 0.0 SET DOMAIN PROTEIN 30, trithorax-like protein 2 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF05965 [flax] [poplar] FYRC F/Y rich C-terminus
Representative CDS sequence Show only first row Show all	>Lus10000645 pacid=23181626 polypeptide=Lus10000645 locus=Lus10000645.g ID=Lus10000645.BGIv1.0 annot-version=v1.0 ATGACCAAAGCTGAAGGCGAAGGCGGCGGTGGGGATGACAAACCCGACGGACTGGAAATCGTATCCATCGGAACTCTTTACTCCGGAGCTTTGGACAAGA AGTACTGGAGCAATTCTAGGGGGAAAGATCGCTATCCTTATCCAGTGGGATACCAAGCTCGCAGGATGTATAGCGGGACCATGTATAAGATGCAAATCAA CGAAGGTCCCAAAGGACCGTCATTCGTGATCACTTCTGCTGATGGAGAGTCTTGTTCTGCTCAAACTCCGGATATTACGTGGGATAAATTTCAGAAGAAG GGGTGCCAACAAATGAAGATATGGCATGGGAAGAGGTTTTCATGCAAGATTGATGGCATAGAGTTTTTTGGGTTCAAAAATCCCTTGGTGCAGCGGTTGC TAAGAGAGTTGATGTCGAATGTGAATGGAATTGCAAAACTGAATCCCTTGCCTTCTAGTCTGTGCAATGAAATAGCTGGAGGAGAGCACCATGATGCACA AGAAACAACCGATGTAGCCCCAGAGTTGGTAAGACCTCTGTTGACAGGGAAAAGGAGTAAAAGGACAAAACCCAAAACTCCTACTTCATTAAGTTCTTTT GGATCGAAAAGACCTCGTAAGCAGGATCCAGCATGCACTAGGGCTGTTTGGAATCCTTTTAATGAGAATTGTAAGCATCAGACTTCCCAGGATACCTCAA CCTTTGATTCAATTGACGAACCTGAAAAATCCAAGTGCATCCCAGCAACAAAACCAATCATATCTGAAGGAGAAAACTGTCAGTCATCAGCAGAAAATGG CTTGCCCTTGAAATCACTGGATGCCTTTAATACGATTGGAGAAGCTACACTATCTGCTTCAAAAGATCACACATCAGTTGGCTTACATATAAAAGGAACT GTTGTTGACAGGTCACCAGATGATATAGTTGAAAGCCTGGATATTCCAACATCAGCAAATGGGAAAGATAGACATGAATGTTACCAAAACAAAACATTAG TTGTGCCTAAGAATTTTCTTTGTGTACCTGATACCTTGGATCCCATGGAAGAGTATGCACACTATGCTCAGGGGCACAGTACAAGCTTTGACAAAGAGCA ATCATCAACTGACACTTCCATTTCGGGAAGAGTGGTTTCTGAATCAAATCAAGGAGATGAAATAACCACACGGATGTCACATGCAGGCATTGACAAGCAA GAGCCAATTGTAGCTGACACTTTCATGTCTGAAGAAGCGCTTTCTGAACCAAATATGGAGGATGAGCTGGCTGCAGGAAGTTCAAGTGGAAGCTCTGAGA AGTTTGACTCTGATTCAGCTGGCCAAGACACAGCAAATTTAATGATGACACTTCTGCTTCCACAAGCAATTCCTCTTCTTAAGGAAACCTCGAACAAGAA AAGGAAATCCAATGCCATGGCGGAAAACTTTATTCCTAGAACAAAACCTCAGGAGGAAAATGAAGAAATTTTGGGTGGTCAATTTTCTAAAATCGAGCAA ACTGAGGCTGTGGTTGTAGACAGTTTTGAGGATGTACAATGTGAGGATTATGTTCTGGGACAACCTGTGGTGCTCTCTGACAATGCCAGGGGAGAACAAT CCGGTGATAGGAAAGATGAAAGAATTCCTCACACTTTTGACGACCCTCTAAATCGAGAATTAAGGGAGGCAGATAGGGAAATCTCTGTACCGTCATCCAA ATCCATTGCTATGGGAGCAAAGACAACTGAAACCAAGAATCAGGAAATTTCTCCAGATCTCAGAAAGGTATATACAAGAAGAAAGACTGCTTCTAAAGCA GTAAAGCACAGTGATCCGCTGTCAGAAAGCACAATATGCAGAAACTATGGGGAAGGATGTGATCCACGATCTATGCTCGACTCTGAACCCTTGAATGTCA GCCTCTCCATTGATGTTGCACATCAAAAGGATCCGTCCAAGGATAGAATCGGTAATGGAGGGCACCCCCATTGTTTAGAAGTGGAGAAAATCACCACGAG TTGCAGGCCCGAGTCAGATGATCTACCTATTTGTGTGTCAACTGAAGGCGAAAGAACTTCAGATGTGCCTATTTTGTGTGTTCCAGTTTCAGAAGAAACC CAAGTTAATTGCAAAGATAGGTTGGTAGAGCTCAGTGCCTTGGTGGATGTTGATGGTTCCTTAACATCACAGAGCAAAGAAATGGGGATGGATACATCAG GTGGTATAGAAGTTCAAGCTAACGCTGACCTGAAGCTCCATAGCAATTCCGAGCTTAACTTTAACTTAGAGGGCATTGCTGAGATTGTGGGCTGCTATCT CCACCCGCTGCCTGTTCTGCAGCTATGGTTGAACTCACAAGAAAATGAAATCTACATTTGTGCCCTATGTGGCATTCTGGCGGATGAACACAGGACCTTG TTTCTTTATAGGTTAGATACTAAAGCCCCAACTACCGGATGCCCATCCTTTGTTGGTCATACAACGGTCAGTTGTCCATCTACAGTGCATATGTTTAGTA AAGTTGCGCCAGAAAGGTCCAGTTTTCAACTAACCCCAGACGGGCAATTACTTGTTCTCCATGGCAGCACGAAAGTGCCTTGTTGCAGGGAAGGGAGAAC GGATTGTTCATGCTCTACATGTGAAGCAGATAGCTGTAGTAGCAGCTCTGTGAAGATTGTAAGAGTATATTTTGGACATGTATCAGTCGTGTTGGAATTG AGGACAGATGAAGAAATCGTATGCATCCTTGTCTGTGAACCTAATAATCTAGTTGCTGCTGTTGAAAGCGGCAAACTGCATTTGTGGACCATGGATTCTA CGTGGAGCACTTCAAAAGAGGAACACACTATATCAAATACGGGTTACTATTCTCCTCGACTTGTGGAGTTAAAGAGCATTCCTAAATCTGAATCTCTAGT TCTAGGCCACGACGGCTTTGAGGAATTTACACTATGGGACATCTCCAGACGAACCTTCATTTCGAGATTCTCCTCTCCAGGAACTTCAATCCATGCGTTT AACCCTATCAGCTGGTTCAGCTGGCAAAATCATCATTGCTTGAACTCCTATAGCCCAGAGGACCACACTAGCAGAATGATGGAAGCCACAAAATCATCAT TAACAGATTGTCCGTTCCCTCACAATGAAGGCGAAGAAGATATCGCCATCTGGCTTCTCGTCTCAACCAACAACGCACCCGACCGTCCAACAGATGATCC AGTCGGATCCTGGAGGCTGGCTCTAATGGCCCAAAATACCATGATACTCGGAGCCACGTTGGATCCAGGGGCAGTAGCTGTCGGCGCGATGGTTGGCCGT GGAGTCATTGCCACTGACGATGGAGTTGTGAGCATGTGGGACTTGTTGACAGGGAACAAACTCGGCAGTCTCCATCATTTCAAAGGTAAGCTTTTGGTCG GTTTGATTTCCATCGAACTGAACTGTGGGGTTGGAAGTTCATATCGGTTCTTACCAGAACCGGAAAGATATTTTCCGGTGTTACCCTAA
AA sequence Show only first row Show all	>Lus10000645 pacid=23181626 polypeptide=Lus10000645 locus=Lus10000645.g ID=Lus10000645.BGIv1.0 annot-version=v1.0 MTKAEGEGGGGDDKPDGLEIVSIGTLYSGALDKKYWSNSRGKDRYPYPVGYQARRMYSGTMYKMQINEGPKGPSFVITSADGESCSAQTPDITWDKFQKK GCQQMKIWHGKRFSCKIDGIEFFGFKNPLVQRLLRELMSNVNGIAKLNPLPSSLCNEIAGGEHHDAQETTDVAPELVRPLLTGKRSKRTKPKTPTSLSSF GSKRPRKQDPACTRAVWNPFNENCKHQTSQDTSTFDSIDEPEKSKCIPATKPIISEGENCQSSAENGLPLKSLDAFNTIGEATLSASKDHTSVGLHIKGT VVDRSPDDIVESLDIPTSANGKDRHECYQNKTLVVPKNFLCVPDTLDPMEEYAHYAQGHSTSFDKEQSSTDTSISGRVVSESNQGDEITTRMSHAGIDKQ EPIVADTFMSEEALSEPNMEDELAAGSSSGSSEKFDSDSAGQDTANLMMTLLLPQAIPLLKETSNKKRKSNAMAENFIPRTKPQEENEEILGGQFSKIEQ TEAVVVDSFEDVQCEDYVLGQPVVLSDNARGEQSGDRKDERIPHTFDDPLNRELREADREISVPSSKSIAMGAKTTETKNQEISPDLRKVYTRRKTASKA VKHSDPLSESTICRNYGEGCDPRSMLDSEPLNVSLSIDVAHQKDPSKDRIGNGGHPHCLEVEKITTSCRPESDDLPICVSTEGERTSDVPILCVPVSEET QVNCKDRLVELSALVDVDGSLTSQSKEMGMDTSGGIEVQANADLKLHSNSELNFNLEGIAEIVGCYLHPLPVLQLWLNSQENEIYICALCGILADEHRTL FLYRLDTKAPTTGCPSFVGHTTVSCPSTVHMFSKVAPERSSFQLTPDGQLLVLHGSTKVPCCREGRTDCSCSTCEADSCSSSSVKIVRVYFGHVSVVLEL RTDEEIVCILVCEPNNLVAAVESGKLHLWTMDSTWSTSKEEHTISNTGYYSPRLVELKSIPKSESLVLGHDGFEEFTLWDISRRTFISRFSSPGTSIHAF NPISWFSWQNHHCLNSYSPEDHTSRMMEATKSSLTDCPFPHNEGEEDIAIWLLVSTNNAPDRPTDDPVGSWRLALMAQNTMILGATLDPGAVAVGAMVGR GVIATDDGVVSMWDLLTGNKLGSLHHFKGKLLVGLISIELNCGVGSSYRFLPEPERYFPVLP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G26330			DNA binding (.1.2)		Lus10000645 [exp]	0	1
AT3G42660			transducin family protein / WD...		Lus10021720 [exp]	1.4	0.9731
AT4G02070		ATMSH6, MSH6-1	MUTS HOMOLOG 6-1, ARABIDOPSIS...		Lus10010010 [exp]	2.0	0.9727
AT1G65470		NFB2, FAS1	NUCLEOSOME/CHROMATIN ASSEMBLY ...		Lus10008729 [exp]	2.2	0.9667
AT4G00020		BRCA2(IV), BRCA...	MATERNAL EFFECT EMBRYO ARREST ...		Lus10002857 [exp]	3.5	0.9677
AT5G46280		MCM3	MINICHROMOSOME MAINTENANCE 3, ...		Lus10025389 [exp]	3.9	0.9707
					Lus10026146 [exp]	4.1	0.9516
AT5G37630		EMB2656	EMBRYO DEFECTIVE 2656, ARM rep...		Lus10004038 [exp]	5.5	0.9661
AT3G20490			unknown protein		Lus10019628 [exp]	5.9	0.9613
AT4G02110			transcription coactivators (.1...		Lus10001455 [exp]	6.5	0.9541
AT4G02110			transcription coactivators (.1...		Lus10002431 [exp]	7.5	0.9242

Compare expression of checked genes

Lus10000645 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.