Plant FIBer expression Database

Lus10000648 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G73970 671 / 0 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10036972
[exp]
1237 / 0 AT1G73970 622 / 0.0 unknown protein
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.008G016000
[exp]
888 / 0 AT1G73970 697 / 0.0 unknown protein
PFAM info
Representative CDS sequence
>Lus10000648 pacid=23181631 polypeptide=Lus10000648 locus=Lus10000648.g ID=Lus10000648.BGIv1.0 annot-version=v1.0
ATGTCTAGACAAAGAAACACTCTATTTCTCGAAAAATGGCTCAGCAGCATTAGTGGCAGTCCCACCGCGAGCCAGTTTTCCTCTTCGTCTACCGGCAACA
TCATTCAAGCATGGGCTGATCTCAGAGACTGTCTTCATAGCCAAGTATTCCAACCCCGTCACCTGCAGTCTTTGACCCTTCTACGAGACTTTGAAGAATC
TCTTTATGTTGCTGATCCTCAAGCAAAGCTTTTACTTGCCATTTGGGAGAAAATCGTTCTTCCTAGCAAAGCACATCCTCTTTTGCTCCGGCTGCTATAT
GTCTGGGTTATGAAGTCCTCCAGACCTTCTCCAATGGTGATAGATTCAGCTGCAGAGGTCCTGAACAAGTTTGTGGCGAGTGAATATGGAGCTACGAAGG
ACTCTGTGTTATTTTCGAATACAATTCTTCTTTTAGGTGCCCTTTCATACGTGACATCTGCATCGGAACGTTCCAAAACAGTATGTCTGGATTTGCTTTG
CAGACTGTTGGAGGAAGACTATAGACTGGCCCGTTCAGTTGAAGTGTTTCTTGCTGGGATCGGGTATGCCTTGTGTTCTTCAGTGAATGTACACTACTAT
CGAAGGGTTTTGGATTCGTTAATGGGGATTTGGGGAAAGGAAGACGGACTGTGTAGTAGCTTAACGAACGGTCTCATGATTTTGCATTTGGTAGAATGGG
TTATACCTGGTATCATGAAATTAGGTTCTCAGGAAAAGTTAGAAACTTTTACAAAAGAGGTTCTCGAAACCCCAAAACCAGACTATCCGCCATTCTCACT
GGTTATGGCTGCAGGAGGTGTTCTTAGAGCTTTAAGTAGATCTGTTCTGAGTGGTCAATGGCTGGATTTGGTTTCCAGATTGAGAGCTTCTTCAGAAAAT
ATGCTAGAATCCATTGCACAGGAATTAAACACTAAAGTCAATGATGGTTCAACCAGTCTTCTATTGCAGTGTGTTTCCTTAGCTTTAGCTCGAGCTGGCT
CAGTATCTTCCCGGGTTCCTCTGCTACTGTCTCTTGCTACAGCATTACTCACTGAGATATTTCCTTTGCGCTGTTTTTACACTAGAATTCTTGCTTCAGT
CGGTTCACCATTACTGGAGTTCAACGAAGTAAACAATCACCTAAATAGCGTTCTTTTCAAAGAAGCAGGAGCCATCAGTGCTGTTTTCTGTAATCAGTAT
GTCTCGGCAGATGAAGAGGGCAAGAACATTGTCGAGAATGCTGTTTGGCGCTTCTGCCGAGAGATATATTCAGGCCATCGGCGGGCGGCTTTATTGCTTT
GTGGTAGAGAAGATCCGTTGCTAGCTAATATTGAGAAAATTGCTGAGTCTTCCTTCCTTATGGTTGTTGTTTTTGCCTTGACTGTTAGCAAGCACAAGTT
GAGCTCAAGCTTCTCCCTCGAAACTCTGATGAAGACATCGGTATCGATATTAGCCTCGTTCTCTTGCATGGAGTACTTTCGTCGTATTCGCTTACCTGAG
TATATGGACACGATACGAGGTGTCGTTGTAAGTGTACAGGAGAACGAGGCTGCTTGCACCTCTTTCGTGGAATCCATGCCTTGTTATGCTGATCTGACAA
ACCCTAAAGATTTCCCACAGCAAGTGCAATATACTTGGTTGAAGGATGAAGTGCAGACTTCCAGGATATTGTTTTACCTGCACGTTATTCCCACGTGTGT
CGAGCGCATTACTGCAGATCTATTCAGCAATGCGGTGGCTCCAACTATGTTCTTATATATGGAACATCCAAATGGGAAGATAGCTCGAGCCTCGCATTCT
ATGTTCGTGGCATTCGTTTCCTTGGGTAAGGAGTCGGATGGTGGCGAAACAGTATCATTGATGGAGCAACTTGCGTTTTACTATGTGCAGAAATCTCTCT
CAGACTACCCCGGATCTACACCTTTTGACAGTATGGCATCTGGATTCTCACATTTGATCCAGAATCTCCCTGCAGGAAGCCCGGCTATATTCTACTGCAT
CCAGAGCCTCGTCGAAAAGGCACAAAACCTCTGTTCGAACGTCTCCATGCAAAATACCGATTCGTGGAAGAACTGGCAAGGAGAGTTGGAGCCATGCAAG
AAGGTTTTCGATATGCTTCTTCGATTCGTTTCCCTCGTTGATATTCAAGTGCTACCTTACCTGATGAAGCAACTGGCGCAGCTGATCATCCAGCTACCTA
AAGATGGCCGAAACACGATCCTTGACGAGTTGTATGAACATGTCGCTGAATCTGATGACGTGATTCGCAAACCTTCACTGGTCTCTTGGCTGCAGTCACT
TTCTTACATATGCTCTCAAGATAGCAGTAACAGTAGAACTGCAGCATCCAAAGAGATTGAATTAAGCTCTCGACTATAG
AA sequence
>Lus10000648 pacid=23181631 polypeptide=Lus10000648 locus=Lus10000648.g ID=Lus10000648.BGIv1.0 annot-version=v1.0
MSRQRNTLFLEKWLSSISGSPTASQFSSSSTGNIIQAWADLRDCLHSQVFQPRHLQSLTLLRDFEESLYVADPQAKLLLAIWEKIVLPSKAHPLLLRLLY
VWVMKSSRPSPMVIDSAAEVLNKFVASEYGATKDSVLFSNTILLLGALSYVTSASERSKTVCLDLLCRLLEEDYRLARSVEVFLAGIGYALCSSVNVHYY
RRVLDSLMGIWGKEDGLCSSLTNGLMILHLVEWVIPGIMKLGSQEKLETFTKEVLETPKPDYPPFSLVMAAGGVLRALSRSVLSGQWLDLVSRLRASSEN
MLESIAQELNTKVNDGSTSLLLQCVSLALARAGSVSSRVPLLLSLATALLTEIFPLRCFYTRILASVGSPLLEFNEVNNHLNSVLFKEAGAISAVFCNQY
VSADEEGKNIVENAVWRFCREIYSGHRRAALLLCGREDPLLANIEKIAESSFLMVVVFALTVSKHKLSSSFSLETLMKTSVSILASFSCMEYFRRIRLPE
YMDTIRGVVVSVQENEAACTSFVESMPCYADLTNPKDFPQQVQYTWLKDEVQTSRILFYLHVIPTCVERITADLFSNAVAPTMFLYMEHPNGKIARASHS
MFVAFVSLGKESDGGETVSLMEQLAFYYVQKSLSDYPGSTPFDSMASGFSHLIQNLPAGSPAIFYCIQSLVEKAQNLCSNVSMQNTDSWKNWQGELEPCK
KVFDMLLRFVSLVDIQVLPYLMKQLAQLIIQLPKDGRNTILDELYEHVAESDDVIRKPSLVSWLQSLSYICSQDSSNSRTAASKEIELSSRL

DESeq2's median of ratios [FLAX]

Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT1G73970 unknown protein Lus10000648
[exp]
0 1
AT5G48040 Ubiquitin carboxyl-terminal hy... Lus10011327
[exp]
1.4 0.9105
AT3G24440 VRN5, VIL1 VERNALIZATION 5, VIN3-LIKE 1, ... Lus10043250
[exp]
2.0 0.9057
AT1G08130 ATLIG1 DNA ligase 1 (.1) Lus10016149
[exp]
3.5 0.9150
AT1G75010 ARC3 ACCUMULATION AND REPLICATION O... Lus10035091
[exp]
5.7 0.8956
AT1G06900 Insulinase (Peptidase family M... Lus10008604
[exp]
8.8 0.8861
AT4G18240 ATSS4, SSIV ARABIDOPSIS THALIANA STARCH SY... Lus10038491
[exp]
9.2 0.8869
AT3G20540 PolIB, POLGAMMA... polymerase I B, polymerase gam... Lus10019619
[exp]
10.4 0.9103
AT4G21190 EMB1417 embryo defective 1417, Pentatr... Lus10027533
[exp]
11.8 0.8845
AT5G35930 AMP-dependent synthetase and l... Lus10020348
[exp]
12.3 0.8529
AT3G52570 alpha/beta-Hydrolases superfam... Lus10014222
[exp]
13.9 0.8461

Lus10000648 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.