Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G13680 432 / 8e-152 PLC-like phosphodiesterases superfamily protein (.1) AT5G67130 377 / 6e-129 PLC-like phosphodiesterases superfamily protein (.1) AT1G49740 362 / 3e-124 PLC-like phosphodiesterases superfamily protein (.1) AT4G36945 338 / 5e-114 PLC-like phosphodiesterases superfamily protein (.1) AT3G19310 338 / 9e-114 PLC-like phosphodiesterases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012600 [exp] 476 / 1e-168 AT1G13680 440 / 5e-155 PLC-like phosphodiesterases superfamily protein (.1) Lus10035130 [exp] 462 / 3e-163 AT1G13680 437 / 7e-154 PLC-like phosphodiesterases superfamily protein (.1) Lus10031973 [exp] 453 / 3e-160 AT1G13680 435 / 1e-153 PLC-like phosphodiesterases superfamily protein (.1) Lus10009368 [exp] 366 / 1e-124 AT5G67130 580 / 0.0 PLC-like phosphodiesterases superfamily protein (.1) Lus10014072 [exp] 342 / 5e-115 AT1G49740 522 / 0.0 PLC-like phosphodiesterases superfamily protein (.1) Lus10019843 [exp] 341 / 8e-115 AT1G49740 524 / 0.0 PLC-like phosphodiesterases superfamily protein (.1) Lus10019339 [exp] 330 / 2e-110 AT4G36945 462 / 1e-161 PLC-like phosphodiesterases superfamily protein (.1) Lus10012665 [exp] 217 / 2e-69 AT1G49740 273 / 4e-92 PLC-like phosphodiesterases superfamily protein (.1) Lus10000092 [exp] 140 / 5e-40 AT4G36945 188 / 2e-58 PLC-like phosphodiesterases superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G144900 [exp] 519 / 0 AT1G13680 462 / 2e-163 PLC-like phosphodiesterases superfamily protein (.1) Potri.004G117500 [exp] 506 / 1e-180 AT1G13680 447 / 8e-158 PLC-like phosphodiesterases superfamily protein (.1) Potri.017G098900 [exp] 505 / 2e-180 AT1G13680 450 / 3e-159 PLC-like phosphodiesterases superfamily protein (.1) Potri.005G140100 [exp] 362 / 1e-122 AT5G67130 572 / 0.0 PLC-like phosphodiesterases superfamily protein (.1) Potri.004G140200 [exp] 361 / 1e-122 AT1G49740 548 / 0.0 PLC-like phosphodiesterases superfamily protein (.1) Potri.007G045700 [exp] 359 / 6e-122 AT5G67130 591 / 0.0 PLC-like phosphodiesterases superfamily protein (.1) Potri.005G139400 [exp] 349 / 4e-118 AT4G36945 505 / 4e-179 PLC-like phosphodiesterases superfamily protein (.1) Potri.007G045200 [exp] 335 / 9e-113 AT4G36945 520 / 0.0 PLC-like phosphodiesterases superfamily protein (.1) Potri.009G100332 [exp] 225 / 6e-72 AT1G49740 341 / 9e-118 PLC-like phosphodiesterases superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0384 [flax] [poplar] PLC PF00388 [flax] [poplar] PI-PLC-X Phosphatidylinositol-specific phospholipase C, X domain
Representative CDS sequence Show only first row Show all	>Lus10000649 pacid=23181632 polypeptide=Lus10000649 locus=Lus10000649.g ID=Lus10000649.BGIv1.0 annot-version=v1.0 ATGGAGTTTGTGATGAAGATGGTATCATCAATGGTGATTATTATAATCCCTCTAGCTTTGATCTCTGTTTCAGCAACAGCTTGCTCCAATGGCCAATGCC AGCTCAAGGACGAATGCTCGAGCGACAAAGACTGCATGAAAGGGCTATACTGTTTGTCATGCCCTGTGGACTTCAAGGGGTCAAGATGTGTTAGATCAAC CGCGTCAGACCAGTTCAAGTTGCTTAACAATTCTCTGCCTTTTAATAAGTATGCATTCTTGGCAACCCACAATTCATTTGCCATTAGAGGGGAGCCATCT CACACTGGAGTCCCTAGGCTTACTGCTACAAACCAAGAAGATAGTGTCATTCAACAGCTTAATCACGGAGTCCGAGCACTGATGTTGGATCCCTACGACT TTAAGGGCGGGATCTGGCTGTGCCATTCGTTCAAGGGGAAATGTCACGATTTTACTGCCTTCGAGCCATTAATGGACACGTTGAAGGAAATAGAGGCGTT CATGTCAGCAAACCCAACAGAGATTGTGACCCTAATCTTGGAAGATCATGTCAAGGCTCCAAATGGGATCTCAAAGATTTTCAAATCATCAGGATTGGAC AAATTCTGGTTCCCAGTTTCCAAAATGCCTAAAGATGGCAAAGAAGACTGGCCACTGGTGAAGGAGATGGTGGCAAATAATCAGAGGCTGATTGTCTTCA CTTCTGATAAGTCCAAGCAACAATCTGAAGGGATTGCTTATCAATGGAACTTCATGGTTGAAACTCAATATGGGAATGGTGGGCTAAAGGGTAACTGTAC AAACAGAAGAGAGTCGGCGGCATTGGACGACACGAGCAAGAGTTTGGTACTAGTGAATCATTTTGGTACACTTGCTGTTAGAGGGATCTCTTGTGATTAC AACTCTCAAGGGTTGATGGAGATGTTGGGGAAATGTTACACCTCGGCTGGTGACCGATGGGCCAACTTCGTAGCCGTCGATTATTACAAGAGAAGCGATG GAGGAGGAGCATTCGAAGCTGTGGATAAGTTGAACGGAGAGATGTTGTGTGGATGCAGTGATGTTCATGCCTGTATGGTAATGTTTCATTTTTATAACCA GTCACCTAATCCAATCTGGTCTATATCTATTTATAGGTAG
AA sequence Show only first row Show all	>Lus10000649 pacid=23181632 polypeptide=Lus10000649 locus=Lus10000649.g ID=Lus10000649.BGIv1.0 annot-version=v1.0 MEFVMKMVSSMVIIIIPLALISVSATACSNGQCQLKDECSSDKDCMKGLYCLSCPVDFKGSRCVRSTASDQFKLLNNSLPFNKYAFLATHNSFAIRGEPS HTGVPRLTATNQEDSVIQQLNHGVRALMLDPYDFKGGIWLCHSFKGKCHDFTAFEPLMDTLKEIEAFMSANPTEIVTLILEDHVKAPNGISKIFKSSGLD KFWFPVSKMPKDGKEDWPLVKEMVANNQRLIVFTSDKSKQQSEGIAYQWNFMVETQYGNGGLKGNCTNRRESAALDDTSKSLVLVNHFGTLAVRGISCDY NSQGLMEMLGKCYTSAGDRWANFVAVDYYKRSDGGGAFEAVDKLNGEMLCGCSDVHACMVMFHFYNQSPNPIWSISIYR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G13680			PLC-like phosphodiesterases su...		Lus10000649 [exp]	0	1
					Lus10009892 [exp]	2.2	0.9865
AT5G58850	MYB	ATMYB119	myb domain protein 119 (.1)		Lus10018220 [exp]	2.4	0.9749
AT2G23945			Eukaryotic aspartyl protease f...		Lus10031113 [exp]	3.5	0.9852
AT2G40290			Eukaryotic translation initiat...		Lus10024444 [exp]	3.5	0.9581
AT4G39830			Cupredoxin superfamily protein...		Lus10009603 [exp]	4.6	0.9826
AT3G08990			Yippee family putative zinc-bi...		Lus10004823 [exp]	5.3	0.9795
					Lus10019151 [exp]	5.9	0.9779
					Lus10030762 [exp]	6.6	0.9627
AT1G60170		EMB1220	embryo defective 1220, pre-mRN...		Lus10002831 [exp]	7.5	0.9699
AT3G44970			Cytochrome P450 superfamily pr...		Lus10013060 [exp]	7.5	0.9714

Compare expression of checked genes

Lus10000649 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.