Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029003 [exp] 171 / 2e-48 AT3G49030 57 / 3e-08 FBD, F-box and Leucine Rich Repeat domains containing protein (.1.2) Lus10028940 [exp] 160 / 3e-48 ND / Lus10034290 [exp] 160 / 1e-45 AT5G02910 53 / 2e-07 F-box/RNI-like superfamily protein (.1.2) Lus10037289 [exp] 147 / 4e-40 AT5G02920 61 / 4e-10 F-box/RNI-like superfamily protein (.1) Lus10001581 [exp] 136 / 2e-35 AT4G21120 915 / 0.0 CATIONIC AMINO ACID TRANSPORTER 1, amino acid transporter 1 (.1) Lus10029083 [exp] 134 / 2e-35 AT1G67390 54 / 6e-08 F-box family protein (.1) Lus10003695 [exp] 120 / 3e-33 ND / Lus10034430 [exp] 111 / 8e-29 ND / Lus10028939 [exp] 110 / 1e-27 AT3G29170 80 / 3e-18 Eukaryotic protein of unknown function (DUF872) (.1)
Poplar homologues Show only best Show top 10	No hit found
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10000650 pacid=23181628 polypeptide=Lus10000650 locus=Lus10000650.g ID=Lus10000650.BGIv1.0 annot-version=v1.0 ATGTTCGGGAGCCTCACAAACTTCCAGAGGTTCGCCGCTGCAACTTCCAAGAGGCTTCTAGAAGGGCCGCCATTACGTTTGGACAGCTTCGCCATCACGC TGGGGTGCGAAACAGACCTCTTCAGGGGTGAACGCCGAGGGTTGTATCGGAAAAACCTCAGCCGTCGTCTTAACCGGTTGCTGCAATCTGCCAGCAGCAG ATCTCCGGTTAAGGTTGCGGAACTCAGTCTGGAACACGTCCGGGTTAGCGGACGGAGTTTATCGAGCTTACTCGTTAATGCTCCTCGTCTTGAGGAATTG AGATTGGGATGGATTTACGGGATTAAAAACCTGCACATCTCTGCTTCTAGTTTCCCATCCTTGAAGTCACTCTTTTCCGAACAAACCAAATCTCGACCGC AGAAACTCCAGCTCAGCTCCGCTCCTCTCCTCCACACTTTCAGCTTCCATGGACGTTGTAACCTCCTGAACCTAGTTTCAGCTCCCAATGTGAAATCCCT AACGCTTCAACCCGATGATGAACTTAAGTGCAGAGAAATTGAGGAATTGATTTCCAAGTTTCCATCTCTCGGGTCTCTCTACTTCAATGCAGCAGAGCTC TGGAAATCCAACCGAAAGGTAAGGATTTCCGCTCATACGCTCCGGGAATTAACTCTCGGTCAGCTATCTTCGGAGACTGAGATCGAGATTGATGCTCCTA ATCTCGAAATGTTAACCATCGATACCAACAAGCTCGACATCAAATGCAATGTGGTCAATGTGGCTCCTAGCTGCCGGTTTGTATTGGGTTGCTCTTTTTT TCCCTCTTCTTCTCTTGGCATCGGAAGTAGGATAACAACAGGTTGGTTGATTGATCTGAGGAAGTGTCTCGCAACATTTGCTACTCGTTTCCACCACCTG GTTTTCAAGCTGGATTTCTGA
AA sequence Show only first row Show all	>Lus10000650 pacid=23181628 polypeptide=Lus10000650 locus=Lus10000650.g ID=Lus10000650.BGIv1.0 annot-version=v1.0 MFGSLTNFQRFAAATSKRLLEGPPLRLDSFAITLGCETDLFRGERRGLYRKNLSRRLNRLLQSASSRSPVKVAELSLEHVRVSGRSLSSLLVNAPRLEEL RLGWIYGIKNLHISASSFPSLKSLFSEQTKSRPQKLQLSSAPLLHTFSFHGRCNLLNLVSAPNVKSLTLQPDDELKCREIEELISKFPSLGSLYFNAAEL WKSNRKVRISAHTLRELTLGQLSSETEIEIDAPNLEMLTIDTNKLDIKCNVVNVAPSCRFVLGCSFFPSSSLGIGSRITTGWLIDLRKCLATFATRFHHL VFKLDF

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10000650 [exp]	0	1
					Lus10018627 [exp]	1.0	0.9446
AT5G41850			alpha/beta-Hydrolases superfam...		Lus10032373 [exp]	2.0	0.9396
AT5G54060		UF3GT	UDP-glucose:flavonoid 3-o-gluc...		Lus10004381 [exp]	3.0	0.9290
AT1G29380			Carbohydrate-binding X8 domain...		Lus10015259 [exp]	7.4	0.9138
AT5G66460		MAN7, AtMAN7	endo-beta-mannase 7, Glycosyl ...		Lus10007210 [exp]	8.5	0.8638
AT5G54160		ATOMT1	O-methyltransferase 1 (.1)		Lus10039864 [exp]	8.5	0.9230
					Lus10041944 [exp]	8.5	0.8975
					Lus10003879 [exp]	8.5	0.8796
					Lus10031014 [exp]	12.2	0.8936
AT3G25855			Copper transport protein famil...		Lus10021687 [exp]	12.8	0.8921

Compare expression of checked genes

Lus10000650 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.