Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G26340 177 / 1e-58 B5 #6, B5#6, ATCB5-A ARABIDOPSIS CYTOCHROME B5 ISOFORM A, cytochrome B5 isoform A (.1) AT2G32720 120 / 9e-36 B5 #4, B5#4, ATCB5-B ARABIDOPSIS CYTOCHROME B5 ISOFORM B, cytochrome B5 isoform B (.1) AT5G48810 117 / 2e-34 B5#3, ATB5-B, ATCB5-D ARABIDOPSIS CYTOCHROME B5 ISOFORM D, cytochrome B5 isoform D (.1) AT5G53560 115 / 4e-34 B5#2, ATB5-A, ATCB5-E ARABIDOPSIS CYTOCHROME B5 ISOFORM E, cytochrome B5 isoform E (.1) AT2G46650 103 / 4e-29 B5 #1, B5#1, ATCB5-C ARABIDOPSIS CYTOCHROME B5 ISOFORM C, cytochrome B5 isoform C (.1) AT1G37130 86 / 2e-20 NIA2-1, CHL3, B29, NR2, NIA2, ATNR2 CHLORATE RESISTANT 3, ARABIDOPSIS NITRATE REDUCTASE 2, nitrate reductase 2 (.1) AT1G77760 86 / 4e-20 GNR1, NIA1 nitrate reductase 1 (.1) AT1G60660 76 / 1e-18 B5 #5, B5#5, ATCB5LP ARABIDOPSIS CYTOCHROME B5-LIKE PROTEIN, cytochrome B5-like protein (.1) AT3G61580 62 / 6e-12 AtSLD1 sphingoid LCB desaturase 1, Fatty acid/sphingolipid desaturase (.1) AT5G09680 60 / 1e-11 RLF reduced lateral root formation (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036973 [exp] 232 / 5e-80 AT1G26340 193 / 8e-65 ARABIDOPSIS CYTOCHROME B5 ISOFORM A, cytochrome B5 isoform A (.1) Lus10008838 [exp] 112 / 2e-32 AT5G53560 232 / 3e-80 ARABIDOPSIS CYTOCHROME B5 ISOFORM E, cytochrome B5 isoform E (.1) Lus10022357 [exp] 111 / 3e-32 AT5G53560 231 / 2e-79 ARABIDOPSIS CYTOCHROME B5 ISOFORM E, cytochrome B5 isoform E (.1) Lus10022794 [exp] 106 / 3e-30 AT2G32720 211 / 1e-71 ARABIDOPSIS CYTOCHROME B5 ISOFORM B, cytochrome B5 isoform B (.1) Lus10032612 [exp] 105 / 7e-30 AT2G32720 218 / 2e-74 ARABIDOPSIS CYTOCHROME B5 ISOFORM B, cytochrome B5 isoform B (.1) Lus10043137 [exp] 105 / 7e-30 AT2G32720 218 / 2e-74 ARABIDOPSIS CYTOCHROME B5 ISOFORM B, cytochrome B5 isoform B (.1) Lus10011858 [exp] 105 / 8e-30 AT2G32720 211 / 5e-72 ARABIDOPSIS CYTOCHROME B5 ISOFORM B, cytochrome B5 isoform B (.1) Lus10030219 [exp] 100 / 6e-28 AT5G53560 151 / 4e-48 ARABIDOPSIS CYTOCHROME B5 ISOFORM E, cytochrome B5 isoform E (.1) Lus10010111 [exp] 99 / 1e-27 AT2G32720 137 / 8e-43 ARABIDOPSIS CYTOCHROME B5 ISOFORM B, cytochrome B5 isoform B (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G156900 [exp] 170 / 1e-55 AT1G26340 166 / 4e-54 ARABIDOPSIS CYTOCHROME B5 ISOFORM A, cytochrome B5 isoform A (.1) Potri.002G242500 [exp] 115 / 5e-34 AT2G32720 221 / 7e-76 ARABIDOPSIS CYTOCHROME B5 ISOFORM B, cytochrome B5 isoform B (.1) Potri.012G024600 [exp] 115 / 6e-34 AT5G53560 163 / 5e-53 ARABIDOPSIS CYTOCHROME B5 ISOFORM E, cytochrome B5 isoform E (.1) Potri.015G007600 [exp] 112 / 6e-33 AT5G53560 153 / 8e-49 ARABIDOPSIS CYTOCHROME B5 ISOFORM E, cytochrome B5 isoform E (.1) Potri.017G054300 [exp] 106 / 2e-30 AT2G32720 221 / 6e-76 ARABIDOPSIS CYTOCHROME B5 ISOFORM B, cytochrome B5 isoform B (.1) Potri.001G314200 [exp] 104 / 1e-29 AT2G32720 199 / 3e-67 ARABIDOPSIS CYTOCHROME B5 ISOFORM B, cytochrome B5 isoform B (.1) Potri.014G019200 [exp] 87 / 9e-23 AT5G48810 115 / 8e-34 ARABIDOPSIS CYTOCHROME B5 ISOFORM D, cytochrome B5 isoform D (.1) Potri.005G172400 [exp] 78 / 2e-17 AT1G37130 1400 / 0.0 CHLORATE RESISTANT 3, ARABIDOPSIS NITRATE REDUCTASE 2, nitrate reductase 2 (.1) Potri.002G088600 [exp] 77 / 2e-17 AT1G77760 1394 / 0.0 nitrate reductase 1 (.1) Potri.018G087600 [exp] 72 / 4e-17 AT1G60660 155 / 4e-50 ARABIDOPSIS CYTOCHROME B5-LIKE PROTEIN, cytochrome B5-like protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00173 [flax] [poplar] Cyt-b5 Cytochrome b5-like Heme/Steroid binding domain
Representative CDS sequence Show only first row Show all	>Lus10000651 pacid=23181630 polypeptide=Lus10000651 locus=Lus10000651.g ID=Lus10000651.BGIv1.0 annot-version=v1.0 ATGCCGGAGCTGACGAAGCTGTACTCGATGCAGGAAGCCTCCGAGCACAACTCTAAGGACGATTGCTGGATCGTCATCGACGGAAAGGTTTACGATGTCA GTTCGTACCTAGATGATCACCCAGGCGGAGACGATGTTCTCCTTCAAGCAACAGGGAAAGATGCAACCGACGATTTCGAAGATGCGGGGCATAGCCAGGA CGCAAGGAACGAGCTGAAAACCTTCTTCATTGGTGAGCTAGACACAACGGCTGCACCAGCCATCCCGGAACTCAAGATTGTTTCCAAGAACGAAAAGTCG GATTCCGTGAAGAAGCTTAAGGACTTGACAAGACAGTACTGGGCTGTACCTGTAGCAGTCGCAGGAATCTCGGTGGTGGTTGGCGGCATCATCGTGTACC TTCGTAAGAAGTAG
AA sequence Show only first row Show all	>Lus10000651 pacid=23181630 polypeptide=Lus10000651 locus=Lus10000651.g ID=Lus10000651.BGIv1.0 annot-version=v1.0 MPELTKLYSMQEASEHNSKDDCWIVIDGKVYDVSSYLDDHPGGDDVLLQATGKDATDDFEDAGHSQDARNELKTFFIGELDTTAAPAIPELKIVSKNEKS DSVKKLKDLTRQYWAVPVAVAGISVVVGGIIVYLRKK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G26340		B5 #6, B5#6, AT...	ARABIDOPSIS CYTOCHROME B5 ISOF...		Lus10000651 [exp]	0	1
AT3G22630		PRCGB, PBD1	20S proteasome beta subunit D1...		Lus10041194 [exp]	4.5	0.8804
AT3G07590			Small nuclear ribonucleoprotei...		Lus10028022 [exp]	5.7	0.8709
AT1G11240			unknown protein		Lus10011247 [exp]	6.0	0.8755
AT5G13340			unknown protein		Lus10035960 [exp]	10.6	0.8458
AT2G44430			DNA-binding bromodomain-contai...		Lus10010335 [exp]	13.6	0.8061
AT3G07590			Small nuclear ribonucleoprotei...		Lus10003727 [exp]	14.7	0.8548
AT3G20190			Leucine-rich repeat protein ki...		Lus10033339 [exp]	15.9	0.8298
AT3G13780			SMAD/FHA domain-containing pro...		Lus10037628 [exp]	21.0	0.8267
AT2G44430			DNA-binding bromodomain-contai...		Lus10021861 [exp]	21.8	0.8041
AT3G05070			unknown protein		Lus10026367 [exp]	24.0	0.8320

Compare expression of checked genes

Lus10000651 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.