Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G03190 533 / 0 ATXPD, UVH6 ULTRAVIOLET HYPERSENSITIVE 6, ARABIDOPSIS THALIANA XERODERMA PIGMENTOSUM GROUP D, RAD3-like DNA-binding helicase protein (.1.2) AT1G20720 80 / 1e-15 RAD3-like DNA-binding helicase protein (.1) AT1G79950 77 / 8e-15 RAD3-like DNA-binding helicase protein (.1) AT1G79890 58 / 9e-09 RAD3-like DNA-binding helicase protein (.1) AT1G20750 45 / 0.0001 RAD3-like DNA-binding helicase protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014662 [exp] 621 / 0 AT1G03190 1402 / 0.0 ULTRAVIOLET HYPERSENSITIVE 6, ARABIDOPSIS THALIANA XERODERMA PIGMENTOSUM GROUP D, RAD3-like DNA-binding helicase protein (.1.2) Lus10011460 [exp] 76 / 2e-14 AT1G79950 1049 / 0.0 RAD3-like DNA-binding helicase protein (.1) Lus10037532 [exp] 74 / 9e-14 AT1G79950 1010 / 0.0 RAD3-like DNA-binding helicase protein (.1) Lus10012249 [exp] 69 / 6e-12 AT1G20720 1074 / 0.0 RAD3-like DNA-binding helicase protein (.1) Lus10011447 [exp] 67 / 1e-11 AT1G79890 1036 / 0.0 RAD3-like DNA-binding helicase protein (.1) Lus10016027 [exp] 64 / 2e-10 AT1G20720 955 / 0.0 RAD3-like DNA-binding helicase protein (.1) Lus10025349 [exp] 45 / 0.0001 AT5G02370 536 / 0.0 ATP binding microtubule motor family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G054000 [exp] 546 / 0 AT1G03190 1410 / 0.0 ULTRAVIOLET HYPERSENSITIVE 6, ARABIDOPSIS THALIANA XERODERMA PIGMENTOSUM GROUP D, RAD3-like DNA-binding helicase protein (.1.2) Potri.001G180200 [exp] 69 / 5e-12 AT1G79950 1042 / 0.0 RAD3-like DNA-binding helicase protein (.1) Potri.001G182600 [exp] 66 / 3e-11 AT1G79890 947 / 0.0 RAD3-like DNA-binding helicase protein (.1) Potri.002G008700 [exp] 56 / 5e-08 AT1G20720 1164 / 0.0 RAD3-like DNA-binding helicase protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF06777 [flax] [poplar] HBB Helical and beta-bridge domain CL0023 [flax] [poplar] P-loop_NTPase PF06733 [flax] [poplar] DEAD_2 DEAD_2
Representative CDS sequence Show only first row Show all	>Lus10000652 pacid=23152234 polypeptide=Lus10000652 locus=Lus10000652.g ID=Lus10000652.BGIv1.0 annot-version=v1.0 ATGAAGTTTCAAATCGAGGACGTCACGGTATACTTCCCGTACGACAACATATACCCGGAGCAGTACTCGTACATGTTGGAGTTGAAGCGAGCCTTAGACG CGAAGGGCCATTGCCTTTTGGAAATGCCTACAGGGACGGGGAAGACTATATCACTTCTTTCCTTAATCACCAGCTACGTCCTGGCTAAGTCCGAGAGTCC AATGAAGTTAATTTACTGCACCAGGACGGTGCATGAGATGGAGAAAACCCTAGCTGAATTGAAACTGTTGCATAACTATCAGGTTAAGCATCTAGGTCCC GCTGCAAGGATCTTAGCTATCGGATTGTCGTCAAGGAAGAATCTTTGCGTGAATCCGAAGGTTGTGGCGGCTGTGAATCGGGATTCCGTCGATGCTGCTT GTAGGAAGCTGACTGCTAGTTGGGTTAGGGCAACGGCTGCTGATAACCCCAGTGTGCCTATATTGAATATGAAGGATGAAATGAAGAAGACAGTAGCAGC TGCTGATGAAGCTGGATATTCAGCTGGAGTTTTGGATGTTAACGGAAGGAAGGAAGACTTCACTAACGACCCTACCTGTGAATTCTTCGAGAGATATGAG CAGGCCGGGAGTAACGCCGTTTTACCCCCTGGAGTCTACACACTAGAGGATCTAAGAGCATTTGGGAAAGAAAATGGTTGGTGTCCGTACTTCTTGGCAA GGCATATGGTGCAATTTGCAAACGTTGTGGTTTATAGCTACCAGTATCTGCTTGATCCAAAGGTGGGGATTATATCTAAAGAAATGCAAAAGGAGTCTGT TGTTGTGTTTGATGAGGCACATAACATCGACAATGTCTGCATTGAAGCTCTTAGTGTTAGTGTGAGAAGACAGACTCTTGAAGGAGCTGTTAGAAATCTT GCTAGGTTAGAGAACGAGATTGACAGGTTCAAGGCCACTGATGAAGGTAGGTTGCGTGCCGAGTACAACAGGCTTGTGGAGGGTTTGGCACTAAGAGGAG ACCTACATGCCTCCGATGCCTGGCTTGCCAATCCTGCATTGCCTGATGATATTCTCCGGCAAGTAGTTAGACAAGCTGCACAATGTGTTGGCCGTGTGAT CCGATCAAAAGCTGATTATGGAATGATGATTTTCGCTGACAAAAGATACAGTCGTCATGACAAGCGGTCTAAGCTGCCCAGTTGGATACTATCCCATCTA CGTGATGCCAATCTTAACTTAAGCACGGACATGGCTTTGCGTATAGCTCGTGAGTTTCTTCGGAAGATGGCTCAACCATATGATAAGACCGGTGCGAGTG GCCGGAAAACACTGCTGTCGCAGGAGGATATAGAAAAGCTGGGTGAGAGAGGCGTGGAGGATATTGTGTATTAA
AA sequence Show only first row Show all	>Lus10000652 pacid=23152234 polypeptide=Lus10000652 locus=Lus10000652.g ID=Lus10000652.BGIv1.0 annot-version=v1.0 MKFQIEDVTVYFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTISLLSLITSYVLAKSESPMKLIYCTRTVHEMEKTLAELKLLHNYQVKHLGP AARILAIGLSSRKNLCVNPKVVAAVNRDSVDAACRKLTASWVRATAADNPSVPILNMKDEMKKTVAAADEAGYSAGVLDVNGRKEDFTNDPTCEFFERYE QAGSNAVLPPGVYTLEDLRAFGKENGWCPYFLARHMVQFANVVVYSYQYLLDPKVGIISKEMQKESVVVFDEAHNIDNVCIEALSVSVRRQTLEGAVRNL ARLENEIDRFKATDEGRLRAEYNRLVEGLALRGDLHASDAWLANPALPDDILRQVVRQAAQCVGRVIRSKADYGMMIFADKRYSRHDKRSKLPSWILSHL RDANLNLSTDMALRIAREFLRKMAQPYDKTGASGRKTLLSQEDIEKLGERGVEDIVY

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G03190		ATXPD, UVH6	ULTRAVIOLET HYPERSENSITIVE 6, ...		Lus10000652 [exp]	0	1
AT5G02380		MT2B	metallothionein 2B (.1)		Lus10025350 [exp]	5.3	0.7908
AT5G53210	bHLH	SPCH, bHLH098	SPEECHLESS, basic helix-loop-h...		Lus10039328 [exp]	5.5	0.8107
AT4G23750	AP2_ERF	TMO3, CRF2	TARGET OF MONOPTEROS 3, cytoki...		Lus10032353 [exp]	6.9	0.7952
AT1G80080		AtRLP17, TMM	TOO MANY MOUTHS, Receptor Like...		Lus10026208 [exp]	9.8	0.7794
AT3G06790			plastid developmental protein ...		Lus10037488 [exp]	11.0	0.7736
AT4G10020		ATHSD5	hydroxysteroid dehydrogenase 5...		Lus10006178 [exp]	11.0	0.7443
AT1G80080		AtRLP17, TMM	TOO MANY MOUTHS, Receptor Like...		Lus10042458 [exp]	11.2	0.7865
AT3G26320		CYP71B36	"cytochrome P450, family 71, s...		Lus10034010 [exp]	14.2	0.6938
AT1G55800			Domain of unknown function (DU...		Lus10016346 [exp]	14.8	0.7740
AT4G03270		CYCD6;1	Cyclin D6;1 (.1)		Lus10002587 [exp]	17.3	0.7725

Compare expression of checked genes

Lus10000652 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.