Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G31530 371 / 1e-124 EMB2289, SCY2 SECY HOMOLOG 2, EMBRYO DEFECTIVE 2289, SecY protein transport family protein (.1) AT2G18710 45 / 9e-05 SCY1 SECY homolog 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014663 [exp] 637 / 0 AT2G31530 705 / 0.0 SECY HOMOLOG 2, EMBRYO DEFECTIVE 2289, SecY protein transport family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G053900 [exp] 442 / 2e-152 AT2G31530 789 / 0.0 SECY HOMOLOG 2, EMBRYO DEFECTIVE 2289, SecY protein transport family protein (.1) Potri.006G175300 [exp] 54 / 1e-07 AT2G18710 739 / 0.0 SECY homolog 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00344 [flax] [poplar] SecY SecY translocase
Representative CDS sequence Show only first row Show all	>Lus10000653 pacid=23152236 polypeptide=Lus10000653 locus=Lus10000653.g ID=Lus10000653.BGIv1.0 annot-version=v1.0 ATGGAGGCGACTCTTCGGTTCACTCCTCAGCTCTTCGGAAGCAGGCCCGTCCAGGTTGGAGGTAAACTTGGAAAGCAGAATCTCCGGTTATGCTGCGTCT CGAAATTCCAGCTTCCCCGCAAGATGTGTGCGATGGACTCTGCACGCCCTTTATTAACCGCTTCCAAACCGATTTTGTTATGCTCGAACCGAAATATCTC AGTGAATTCTGCTGATAAACTTCAAAGTGACTATGTGAATGTTGAAGATTCGTCTGTAGATGAAGCTGTACCACCAAGACTAAGTGATGGAGAATCTCAC CCTCGTTCGAGTAATGGTGTTGCAACTGTGCAGCCCCGAGTTAAGATGTTCCGGAATAGATTTCTGAACTTTTTGCGAATGAGTTCCGTGCTCAACGATG CTGCAGTGTCGTTTTTTAAGAGTGAGATACGGCGAAGATTGTTCGTCACAGCTGTTCTAATTGTGGCCAGTCGTGTTGGATATTATATTCCATTGCCTGG GTTCGATAGACGACTGATACCTCGAGATTACCTGAGCTTTGTCTCAGGATCTGTTGATGAACTCGGAGATTTGACAGCAGAGCTTAAATTGTCGTTCTTC CAGCTTGGAATCAGTCCACAGATATTAGCATCAATTCTTATGCAGTTTCCTTCTAGATGGTGGGGTTCACTCGGGTTTGCTACTGTGGAAGCAATAGCGA TTGCTTGTTATTCACTTCCCTACTCCGTATATGCAGCTAGTTACAGGTATAGTCAGAAAATATGCCTTGTCAGTTCTTGCTTGGTTATATTGGTCAGTGG ACACCCCAGATGGTTCAAACATGTAATGCTGACATCTTTTCTTTTGGTCTGTGGCGCGATGACTGTGACGTGGATCTGTGATACTATAACGGAATCTGGA TTTGGTCAAGGGTCATCTTTAATCATATGTGTGGGAATTCTGACGGGCTACACTGATACGCTGCACAAGATGTTGACTCAACTCTCAGGTAGTGCCCGCA CTTCGTGGCCATACGGTCTTGGGCTGTTGGGCATTTTTACTGTAGTCACTATGTGGGCAGTTGTCGTTACCGAGGGTTGCAGGAAAATAAAGTTGCAGTA TTATGGTTTCAAACTCGCATCAGCTGCAAGGTAG
AA sequence Show only first row Show all	>Lus10000653 pacid=23152236 polypeptide=Lus10000653 locus=Lus10000653.g ID=Lus10000653.BGIv1.0 annot-version=v1.0 MEATLRFTPQLFGSRPVQVGGKLGKQNLRLCCVSKFQLPRKMCAMDSARPLLTASKPILLCSNRNISVNSADKLQSDYVNVEDSSVDEAVPPRLSDGESH PRSSNGVATVQPRVKMFRNRFLNFLRMSSVLNDAAVSFFKSEIRRRLFVTAVLIVASRVGYYIPLPGFDRRLIPRDYLSFVSGSVDELGDLTAELKLSFF QLGISPQILASILMQFPSRWWGSLGFATVEAIAIACYSLPYSVYAASYRYSQKICLVSSCLVILVSGHPRWFKHVMLTSFLLVCGAMTVTWICDTITESG FGQGSSLIICVGILTGYTDTLHKMLTQLSGSARTSWPYGLGLLGIFTVVTMWAVVVTEGCRKIKLQYYGFKLASAAR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G31530		EMB2289, SCY2	SECY HOMOLOG 2, EMBRYO DEFECTI...		Lus10000653 [exp]	0	1
AT3G07160		CALS9, ATGSL10	glucan synthase-like 10 (.1)		Lus10042959 [exp]	8.1	0.8686
AT1G50030		TOR	target of rapamycin (.1.2)		Lus10037246 [exp]	8.2	0.8712
AT1G79000		ATHAC1, ATHPCAT...	ARABIDOPSIS THALIANA P300/CBP ...		Lus10033319 [exp]	10.7	0.8635
AT2G29200		APUM1	pumilio 1 (.1)		Lus10000515 [exp]	11.3	0.8555
AT4G32820			Tetratricopeptide repeat (TPR)...		Lus10007462 [exp]	16.9	0.8445
AT3G11910		AtUBP13, UBP13	ubiquitin-specific protease 13...		Lus10034130 [exp]	19.0	0.8440
AT3G11960			Cleavage and polyadenylation s...		Lus10017295 [exp]	22.0	0.8539
AT2G24530			unknown protein		Lus10026225 [exp]	26.5	0.7898
AT2G25730			unknown protein		Lus10007687 [exp]	26.5	0.8533
AT1G24300			GYF domain-containing protein ...		Lus10032021 [exp]	33.0	0.8423

Compare expression of checked genes

Lus10000653 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.