Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G03180 287 / 2e-94 unknown protein AT2G31530 254 / 5e-78 EMB2289, SCY2 SECY HOMOLOG 2, EMBRYO DEFECTIVE 2289, SecY protein transport family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014663 [exp] 452 / 3e-152 AT2G31530 705 / 0.0 SECY HOMOLOG 2, EMBRYO DEFECTIVE 2289, SecY protein transport family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G208700 [exp] 348 / 1e-118 AT1G03180 290 / 7e-99 unknown protein Potri.002G053900 [exp] 270 / 4e-84 AT2G31530 789 / 0.0 SECY HOMOLOG 2, EMBRYO DEFECTIVE 2289, SecY protein transport family protein (.1) Potri.002G053801 [exp] 185 / 1e-56 AT1G03180 142 / 6e-43 unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00344 [flax] [poplar] SecY SecY translocase
Representative CDS sequence Show only first row Show all	>Lus10000654 pacid=23152235 polypeptide=Lus10000654 locus=Lus10000654.g ID=Lus10000654.BGIv1.0 annot-version=v1.0 ATGCAGCCTCTTCTCACGACAACTTATCTCTTAGCGATTCCCAGTATAATAGCAGGTTTGAATGCTAGACCATCCCAGAATATGTTGTTTTATCTGACTT CTGATTCTGCTGGTTACAGTGTCTTCGGTTCATCTTTATGGGAGCATATTAGGGAGATACTGAACCCTCAAAGCTCTATCGGTGCTGAGCCTTGGGTTTA CTACACAATTTATGCATTCTTCGTCTTTCTATTCAACATATTTGACATTGCGAACTTACCAAAGGAGATTGCAGACTACTTAAATAAGATGGGTGCCAGG ATACCAAATATAAAGCCTGGGAAGGGTACGATTGAGTATCTAACGAAGATTCAGGCATCTACACGATTCTGGGGAGGTCTTTTGTTGAGTATATTGGCAA CGACGTCAAGCATACTCGATCGTTATCTACACAGCATAAATGAGGGATTTGCTATCGGGTTTACATCTGTTCTGATAATTGTGGGCTCCATTATCGAACT GAGAAGATCCTACCAAGCCTACAATGTTATGCCCGGTTTGAGCAAAGCATTGAGGCGTCCACGCATTCAAAACGCCCGGATTATCTCCCCAACGGTAAAG CTCCGAGGTCCGACTAGAGAAGTGGAAATGGCGGAAGGAAGCGTAAACCCCAAAACGGAGGACGTCACTGTAATTGAAGCCAGGGCCGACTGTTTAGGCT CCTCCGGCATCTTCCATGTCATCAAAGACGTTATCGGCTTCGTCCTCTACATGCATCAGCAAATCCCTTCTATTTTGCAGGACCTTAGTGCTGAGTACGA TAATCTACAGACGGAGTGTAAGGATTTGGAGAGTGCACTTTCACTGTGTGAAGCAAAGGGTTCCTTCAAAAGACAACAGGCAGGCCGAATGCGAGAAATC AAGCGGGGAATTAAAAAGCTTCAGAAGTTGATGAACACAGTTGATGGTCTTGAGACTGCACTGCAATTGATAATTAGTGAGGTTCCTGGAATGGAGAGCG TGATTTTGATCCTTGGATTCAGTCCTATTCGGCCTTATCATGTATATGAGTTTTGCTTCGCACATGGAAATGCTGAGGCAGCGGATACCAGTGATTTTAC CAGAAATAGAGTAGTAGAAGGGCTTGCAAGAAAGGCTATTCGAGCATTGGTCAGCAAAGGTGCTGGATCTGGCACTTACCCAGGACCTACAAGGTTGTTT CTACTGGTAAAAGCTCCATCTTCTTTCAATTCGCCTCTTCATTTTCTGCCGAAACGTGACTTCAAATATAGCAAAAAGGTTGTACCTTTCAGAGTGCAAT TCAAGTGTAGAAGTCAAGGTCTCTCACCAGTTGACCAGAACTATGCTATTAACAAGTCTAACGGTACAGGGGATTCAGCGTCCAACGATTTAATCTGGTT TCAGTGCCGCCATGTTCTGAAGGGCCTTGCATTCAAGATTCCAGACGAGGAATAA
AA sequence Show only first row Show all	>Lus10000654 pacid=23152235 polypeptide=Lus10000654 locus=Lus10000654.g ID=Lus10000654.BGIv1.0 annot-version=v1.0 MQPLLTTTYLLAIPSIIAGLNARPSQNMLFYLTSDSAGYSVFGSSLWEHIREILNPQSSIGAEPWVYYTIYAFFVFLFNIFDIANLPKEIADYLNKMGAR IPNIKPGKGTIEYLTKIQASTRFWGGLLLSILATTSSILDRYLHSINEGFAIGFTSVLIIVGSIIELRRSYQAYNVMPGLSKALRRPRIQNARIISPTVK LRGPTREVEMAEGSVNPKTEDVTVIEARADCLGSSGIFHVIKDVIGFVLYMHQQIPSILQDLSAEYDNLQTECKDLESALSLCEAKGSFKRQQAGRMREI KRGIKKLQKLMNTVDGLETALQLIISEVPGMESVILILGFSPIRPYHVYEFCFAHGNAEAADTSDFTRNRVVEGLARKAIRALVSKGAGSGTYPGPTRLF LLVKAPSSFNSPLHFLPKRDFKYSKKVVPFRVQFKCRSQGLSPVDQNYAINKSNGTGDSASNDLIWFQCRHVLKGLAFKIPDEE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G03180			unknown protein		Lus10000654 [exp]	0	1
AT3G20740		FIE1, FIS3, FIE	FERTILIZATION-INDEPENDENT ENDO...		Lus10011165 [exp]	3.2	0.8362
AT3G07740		HXA2, HXA02, HA...	homolog of yeast ADA2 2A (.1.2...		Lus10006383 [exp]	3.6	0.8480
AT1G67080		ABA4	abscisic acid (aba)-deficient ...		Lus10028476 [exp]	4.6	0.8215
AT2G34050			unknown protein		Lus10013954 [exp]	7.3	0.8293
AT5G54850			unknown protein		Lus10043054 [exp]	8.9	0.8328
AT5G28060			Ribosomal protein S24e family ...		Lus10015941 [exp]	10.8	0.8328
AT1G16570			UDP-Glycosyltransferase superf...		Lus10026065 [exp]	11.6	0.7995
AT4G36290		CRT1	compromised recognition of TCV...		Lus10014276 [exp]	12.8	0.8321
AT1G56310			Polynucleotidyl transferase, r...		Lus10031404 [exp]	14.6	0.7733
AT3G29270			RING/U-box superfamily protein...		Lus10015732 [exp]	15.2	0.7943

Compare expression of checked genes

Lus10000654 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.