Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G19260 81 / 7e-18 FAF3 FANTASTIC FOUR 3, Protein of unknown function (DUF3049) (.1) AT4G02810 68 / 4e-13 FAF1 FANTASTIC FOUR 1, Protein of unknown function (DUF3049) (.1) AT1G03170 67 / 5e-13 FAF2 FANTASTIC FOUR 2, Protein of unknown function (DUF3049) (.1) AT3G06020 54 / 4e-08 FAF4 FANTASTIC FOUR 4, Protein of unknown function (DUF3049) (.1) AT1G54740 48 / 3e-06 Protein of unknown function (DUF3049) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014665 [exp] 360 / 2e-126 AT1G03170 76 / 1e-15 FANTASTIC FOUR 2, Protein of unknown function (DUF3049) (.1) Lus10042576 [exp] 158 / 3e-47 AT5G19260 95 / 4e-23 FANTASTIC FOUR 3, Protein of unknown function (DUF3049) (.1) Lus10022036 [exp] 149 / 8e-44 AT1G03170 92 / 2e-22 FANTASTIC FOUR 2, Protein of unknown function (DUF3049) (.1) Lus10034061 [exp] 69 / 2e-13 AT5G19260 92 / 2e-21 FANTASTIC FOUR 3, Protein of unknown function (DUF3049) (.1) Lus10010520 [exp] 68 / 5e-13 AT5G19260 96 / 4e-23 FANTASTIC FOUR 3, Protein of unknown function (DUF3049) (.1) Lus10041217 [exp] 68 / 5e-13 AT5G19260 111 / 5e-29 FANTASTIC FOUR 3, Protein of unknown function (DUF3049) (.1) Lus10004098 [exp] 60 / 5e-10 AT5G22090 200 / 3e-58 Protein of unknown function (DUF3049) (.1), Protein of unknown function (DUF3049) (.2) Lus10013353 [exp] 56 / 1e-08 AT5G22090 199 / 8e-58 Protein of unknown function (DUF3049) (.1), Protein of unknown function (DUF3049) (.2) Lus10020626 [exp] 47 / 7e-06 AT5G22390 96 / 4e-24 Protein of unknown function (DUF3049) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G209100 [exp] 135 / 6e-38 AT1G03170 89 / 8e-21 FANTASTIC FOUR 2, Protein of unknown function (DUF3049) (.1) Potri.002G053400 [exp] 119 / 5e-32 AT4G02810 70 / 9e-14 FANTASTIC FOUR 1, Protein of unknown function (DUF3049) (.1) Potri.008G149600 [exp] 97 / 3e-23 AT5G19260 95 / 3e-22 FANTASTIC FOUR 3, Protein of unknown function (DUF3049) (.1) Potri.010G091800 [exp] 94 / 3e-22 AT5G19260 104 / 8e-26 FANTASTIC FOUR 3, Protein of unknown function (DUF3049) (.1) Potri.009G016600 [exp] 70 / 2e-13 AT5G22090 195 / 4e-56 Protein of unknown function (DUF3049) (.1), Protein of unknown function (DUF3049) (.2) Potri.001G216000 [exp] 63 / 4e-11 AT5G22090 172 / 1e-47 Protein of unknown function (DUF3049) (.1), Protein of unknown function (DUF3049) (.2) Potri.004G201500 [exp] 56 / 7e-09 AT5G22390 72 / 4e-15 Protein of unknown function (DUF3049) (.1) Potri.005G037600 [exp] 41 / 0.0004 AT1G54740 104 / 7e-26 Protein of unknown function (DUF3049) (.1) Potri.002G092000 [exp] 40 / 0.0006 AT1G22110 130 / 2e-36 structural constituent of ribosome (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF11250 [flax] [poplar] FAF Fantastic Four meristem regulator
Representative CDS sequence Show only first row Show all	>Lus10000655 pacid=23152231 polypeptide=Lus10000655 locus=Lus10000655.g ID=Lus10000655.BGIv1.0 annot-version=v1.0 ATGTCCTCCGCCTCATCCACAAGTTGCTATCATCAGGAGGGCCTCCAATCCAACCACCTGGCGGCTGAGCCACGTGTCTTGCGGCTTCGTTTCGCCGCCG CCCCACCACCTCCAAACACAAACATTATCCCTTATTCCTCCGACTCCGACTCCGACCACAATGCCGCCAGAGGCGGATTGAGCTTCCTCCAATGCATCAC TACTACAACCAAAGAAACTGCATATGACGGCGAACAACAAACCCACAACCGAAAGTCGGCGGCTTTGAGCAAACAGAGCCTTGAAATGTGTACTGAGAGC TTGGGTAGCGAGACCGGAAGCGACGACCCCTGTAGCAGCGACGACGATCAGTTGATGCTACAGAGCTGCCGTGTTGATAACATATTCTGGAAGCAGCAGA ATGAGGAGGAGAATACTAGTACTATTACTATTACTGGTACAAATTCTGTTTCTTGTACCAGTACAAGAAACAGAGTGCAGAGGAGTAGGAAATTAGAATT TCCACCTCCCTTGTCGTCAAGTGGGGTTCAAATGAGGTCTCACCGGGAAGACGGAAGGCTGGTGTTGACGGCGGTGGAAGCGTCGTCTTGTCGTGCTAAG TTTCACGCGGAGAGAAGTAATGGCCGGCTCAGGCTGCATCTTACAACTACTGCTGATTATTATCCCACTGAAATGCAGGAAGAAGCAGAGGATGAGAAAA CAGAGCATGAAGTGGTGATGGCGAGAGGGAGGTGTAAGGAAACAGGGGAGGGAAACAGAGGATTATTGCTGCAGAATTGGGAGCCATTTTGGGTGTCTGC TTAA
AA sequence Show only first row Show all	>Lus10000655 pacid=23152231 polypeptide=Lus10000655 locus=Lus10000655.g ID=Lus10000655.BGIv1.0 annot-version=v1.0 MSSASSTSCYHQEGLQSNHLAAEPRVLRLRFAAAPPPPNTNIIPYSSDSDSDHNAARGGLSFLQCITTTTKETAYDGEQQTHNRKSAALSKQSLEMCTES LGSETGSDDPCSSDDDQLMLQSCRVDNIFWKQQNEEENTSTITITGTNSVSCTSTRNRVQRSRKLEFPPPLSSSGVQMRSHREDGRLVLTAVEASSCRAK FHAERSNGRLRLHLTTTADYYPTEMQEEAEDEKTEHEVVMARGRCKETGEGNRGLLLQNWEPFWVSA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G19260		FAF3	FANTASTIC FOUR 3, Protein of u...		Lus10000655 [exp]	0	1
AT2G39770		VTC1, SOZ1, GMP...	VITAMIN C DEFECTIVE 1, SENSITI...		Lus10001014 [exp]	2.8	0.8281
AT3G26990			ENTH/VHS family protein (.1)		Lus10032013 [exp]	3.7	0.8189
AT2G11890			adenylate cyclases (.1.2)		Lus10024472 [exp]	8.1	0.7972
AT3G26744	bHLH	SCRM, ATICE1, I...	SCREAM, A. THALIANA INDUCER OF...		Lus10043199 [exp]	8.4	0.7961
AT5G14060		CARAB-AK-LYS	Aspartate kinase family protei...		Lus10041523 [exp]	8.9	0.8017
AT4G14723		EPFL4, CLL2	epidermal patterning factor li...		Lus10006616 [exp]	18.2	0.7402
AT2G31400		GUN1	genomes uncoupled 1 (.1)		Lus10003657 [exp]	18.3	0.7179
AT1G18490			Protein of unknown function (D...		Lus10038962 [exp]	20.1	0.7485
AT1G64260			MuDR family transposase (.1)		Lus10038037 [exp]	23.5	0.7800
AT5G10240		ASN3	asparagine synthetase 3 (.1.2)		Lus10041698 [exp]	26.5	0.8050

Compare expression of checked genes

Lus10000655 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.