Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G03160 949 / 0 FZL FZO-like (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014666 [exp] 1594 / 0 AT1G03160 1027 / 0.0 FZO-like (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G209200 [exp] 1100 / 0 AT1G03160 994 / 0.0 FZO-like (.1.2) Potri.002G053332 [exp] 285 / 4e-89 AT1G03160 278 / 2e-88 FZO-like (.1.2) Potri.002G053366 [exp] 188 / 1e-54 AT1G03160 195 / 7e-58 FZO-like (.1.2) Potri.004G230600 [exp] 45 / 0.0003 AT5G39960 787 / 0.0 GTP binding;GTP binding (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF01926 [flax] [poplar] MMR_HSR1 50S ribosome-binding GTPase
Representative CDS sequence Show only first row Show all	>Lus10000656 pacid=23152232 polypeptide=Lus10000656 locus=Lus10000656.g ID=Lus10000656.BGIv1.0 annot-version=v1.0 ATGATACCTCTTCTCTCCCTCCACAATCCTCCTCCGCCTCCTCCTCTCTTCCTCTTCTCTCCTTCCCCTTCCTTCTTCCCTTTACTCCCTCGCTTCAGGT CCTCTTCTCCCCTTCTTCCTCCGCATCACCTAGCAGTTCACTCCCTCCCGAAGAATTCCTCATCTCAACTCTCCGGTGACCAGACGCAGCAGCTGAGGAC TCTATTCCCCGGCGGATACAAGCGTCCGGAAATCAAGGTCCCGAGCATTGTGCTCCAGCTCCGGCCCGAAGAGGTTCTTAACGGCGGAGACGATGCCTTG GATCTGATTGACAGAACCGTATCTCGTTGGGCTGGAATCGTCGTGCTTAATGGCGACGAAGGCGGTGGGAAATCGCTCTACGAAGCCGCGTGTCTGTTGA AGTCTGTCGTTAAGGATCGTGCCTACCTGTTGATTGCCGAGCGCGTCGATATTGCCGCCGCTGTTAACGCTAGCGGAGTCGTTGTTTCCGATCAAGGTCT TCCCGCCATTGTCGCGAGAAGGATGATGATGGAGTCCAAGTCAGAATCGGTCCTTCTTCCTTTGGTTGCTAAGATCGTTGAAACTCCGAAGTCTGCCGTT GACGGGGCTAGTTCCGAAGGAGCTGATTTTCTCATTCTGACATCTGCTAGTGAAGATACTTTCGATTCGGAATTCGACTCTGGGTTTCAGAATGTGAAGA TTCCGATCTTTGTTGGTTATGCTCCGAACCAGGAGGTTGCGCCACTAATGATAAAATTTCGTCCAAGTGGTTATGTTATGTCACTGGAAGATTTGAGGCT AGTTAGTGATAATTCTTTGAGGCAGCTGTTTCAACCAGTGAGCAAATTGGAACAGAAAACTCAGAATGAAGTCGCAGAATTCAATACGTACAAGGGGTTG AATTTAGAGAATGAAGTTAATGGGAAAGATACCGTGGCAGGGTTTGTTAGAGTGGAGGATAAAGGAAAACGGATCATTAAGAAAGAGAAATCAGTGTTGC TTGAAGCTATTGACATTATGAAGAAAGCTGTCCCTATGATGGAGGAGATCTCACTTCTAGTTGATGCAGTTTCTCAAATTGATGAGCCATTTTTACTGGC CATAGTGGGTGAATTTAACTCTGGAAAGTCAAGTGTGATTAATGCACTACTCGGGAAAAAATATCTCAAAGAAGGTGTTATCCCTACAACCAATGAGATT ACCTTTCTTTGCTATTCTTCATTTGATGCCGAAGATCAACAGCGGTGTGAAAGGCATCCAGATGGCCAATTTATTTGCTATCTTCCAGCCCCAATTCTTA AAGAAATGAACATTGTTGACACGCCAGGAACCAATGTCATTCTCCAAAGGCAGCAACGCCTAACCGAGGAGTTTGTGCCTCGTGCAGATTTGCTTCTTTT TGTAATTTCAGCTGACCGGCCATTGACTGAAAGTGAGGTTACTTTTCTACGTTATACTCAGCAGTGGAAGAAGAAGATTGTGTTTGTGTTGAACAAGTCT GATCTATACCGGAATGACAGTGAACTTGAGGAGGCTTTGTCTTTTATCAAAGAGAATACCAGGAAGTTGTTAAACTCTGAAAGTGTGACAGTCTACCCTG TATCTGCTCGGTCTGCACTTGAAGCAAAATTGTCAACTTTGGATCTTTCCAGTATCCATACAGAGTCTCATTGGAGAACTGGGAAGTTCTATGAGCTTGA GAAGTTCTTGTATAGCTTTTTAGATGGCACAACAAGGAATGGCATGGAAAGAATGAGGCTCAAACTTGAAACTCCAATACGAATTGCTGAACGGTTGCTC TCTGCTTGTGATACTGCTGTAAAACAAGACTGCAGACTTGCCAAGCAGGATGTGGCATATGCAGCTGAAATAGTTGAAAGTCTGAAAGATTACACCGCAA AGATGGAAAACGAGAGCATCTCTTGGAGAAGAAAAGCTCTATCACTGATTGATGCTACCAAAATCCGTGTTCTGGACTTGATAGAATCAACGCTGCAGAT ATCAAATCTTGATCTTGTTGCTTCATATGTTTTTAAAGAAAAGTCTGAGATGCCATCAAGTTTAAAGATTCAAGATGAAATAATGTCTCCCGCACTCTCT GGTGCTAAAGAACTCCTTAAAGAGTATCAGACATGGTTGAGATCGAACAGTTCCCGCAAGGCAAAACTGCGTAGGGAATCTTTTGACAAAAGGTGGCCTT TGATTATTGACCGGAATACTCAGATGCAGTTGGATGCGGCAGAGTCGCTGAAGATAGTGAACGAGTCTAGCTCGGAAGTGCTAGAGAACTTTAGCGTCAT CAGTGCTTCCAAGTTATTCCAACAAGAAATACGCGAATTGTTCGTGAGTACGTTTGGTGGTGTTGGAGCTGCTGGCTTGCTGGCCTCTCTTTTGACATCA GTGCTGCCCACTACTCTCGAAGATCTTCTCGCACTTGGATTTTGTTCTGCTGGAGGGTACATTGCAATTCTGAACTTCCCCGCTCGAAGAAAGGCGATGA TGGACAAGGTAAACAAGATTGCAGACGGCTTGGCGCTGGAAGTAGAAGAAGCGATGCAGAAGGATCTAACTGAAACGCTTGGTAATCTAGATACTTTTGT AAAAACCATAGGTAAGCCTTACCAAGATGCAGCACAAGAAAAGTTAGACAGGCTTCTTGCGGTACAAACGGAAGTCTCCGATGTAGACGGGAAGATTAGA ACGCTGCAAGTAGAAATTCAGAACCTTCATGTATCAGACATCATTTGA
AA sequence Show only first row Show all	>Lus10000656 pacid=23152232 polypeptide=Lus10000656 locus=Lus10000656.g ID=Lus10000656.BGIv1.0 annot-version=v1.0 MIPLLSLHNPPPPPPLFLFSPSPSFFPLLPRFRSSSPLLPPHHLAVHSLPKNSSSQLSGDQTQQLRTLFPGGYKRPEIKVPSIVLQLRPEEVLNGGDDAL DLIDRTVSRWAGIVVLNGDEGGGKSLYEAACLLKSVVKDRAYLLIAERVDIAAAVNASGVVVSDQGLPAIVARRMMMESKSESVLLPLVAKIVETPKSAV DGASSEGADFLILTSASEDTFDSEFDSGFQNVKIPIFVGYAPNQEVAPLMIKFRPSGYVMSLEDLRLVSDNSLRQLFQPVSKLEQKTQNEVAEFNTYKGL NLENEVNGKDTVAGFVRVEDKGKRIIKKEKSVLLEAIDIMKKAVPMMEEISLLVDAVSQIDEPFLLAIVGEFNSGKSSVINALLGKKYLKEGVIPTTNEI TFLCYSSFDAEDQQRCERHPDGQFICYLPAPILKEMNIVDTPGTNVILQRQQRLTEEFVPRADLLLFVISADRPLTESEVTFLRYTQQWKKKIVFVLNKS DLYRNDSELEEALSFIKENTRKLLNSESVTVYPVSARSALEAKLSTLDLSSIHTESHWRTGKFYELEKFLYSFLDGTTRNGMERMRLKLETPIRIAERLL SACDTAVKQDCRLAKQDVAYAAEIVESLKDYTAKMENESISWRRKALSLIDATKIRVLDLIESTLQISNLDLVASYVFKEKSEMPSSLKIQDEIMSPALS GAKELLKEYQTWLRSNSSRKAKLRRESFDKRWPLIIDRNTQMQLDAAESLKIVNESSSEVLENFSVISASKLFQQEIRELFVSTFGGVGAAGLLASLLTS VLPTTLEDLLALGFCSAGGYIAILNFPARRKAMMDKVNKIADGLALEVEEAMQKDLTETLGNLDTFVKTIGKPYQDAAQEKLDRLLAVQTEVSDVDGKIR TLQVEIQNLHVSDII

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G03160		FZL	FZO-like (.1.2)		Lus10000656 [exp]	0	1
AT5G04900		NOL	NYC1-like (.1)		Lus10034874 [exp]	1.4	0.9060
AT1G03160		FZL	FZO-like (.1.2)		Lus10014666 [exp]	2.8	0.9312
AT5G19540			unknown protein		Lus10034912 [exp]	3.0	0.9059
AT1G74710		ATICS1, SID2, E...	SALICYLIC ACID INDUCTION DEFIC...		Lus10023622 [exp]	5.3	0.8919
AT3G21810	C3HZnF		Zinc finger C-x8-C-x5-C-x3-H t...		Lus10015103 [exp]	6.5	0.8492
AT1G64430			Pentatricopeptide repeat (PPR)...		Lus10003876 [exp]	6.7	0.9055
AT1G64430			Pentatricopeptide repeat (PPR)...		Lus10001823 [exp]	9.2	0.9056
AT3G02450			cell division protein ftsH, pu...		Lus10034097 [exp]	9.2	0.8924
AT5G10960			Polynucleotidyl transferase, r...		Lus10042746 [exp]	10.1	0.8440
AT2G41680		NTRC	NADPH-dependent thioredoxin re...		Lus10042048 [exp]	11.7	0.8639

Compare expression of checked genes

Lus10000656 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.