Plant FIBer expression Database

Lus10000657 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues

No hit found

Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10014667
[exp]
360 / 4e-127 ND /
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.002G053200
[exp]
40 / 0.0006 ND /
PFAM info
Representative CDS sequence
>Lus10000657 pacid=23152233 polypeptide=Lus10000657 locus=Lus10000657.g ID=Lus10000657.BGIv1.0 annot-version=v1.0
ATGGCTCGGAAACGCAGCAGTACTTCAGCTTCTCAGCTTGAAGAAGTGGTCACTCCTCCCTCCCTGGCTAAAAATTCCAGGCAGCCAGGGGATGAAACCA
ACAACTCCTCTACCAAACTGTCCCCAGCAACTGTCAAGACGACTCCTTCGAAGAAGGCTAAGAGTAGCCGTGAGGAAACCCCGAAGACAACGTCTTTGAA
GAATGCTAAGAGAACACCTAGTGGAGGTGGAAGTAGGCGCTCTAGTCGCCTACATAACGTAGGCAGAACTACTTCTAATACCACTGCCAACAAGGAAATC
AATTGCATAGTTGAGGATATAACCAGCACTGATAGCGAGAAGGAGGAACACGAGCAGCCGGTGGTGGAAGAAACTGGGGAGAAGAGCAAGGAAGAACTTG
CTAAACTTTGTGAGGAGCAACAGAAGACCATAGATGAACAGCAGAAGAACATAGCTGAACTGAAGGCTGAAACTGACTACCAGATATCGAAGAATGCCTT
GCCAAATGAAAGGCCCTCTGACCAGAGATACAAGAGCTTGTACATCGATTCCAGGAAGGAGCTGGATGTCTTGACAAAGGAGACTCATCAGTTGCGAATA
GATATCGAGTATGCTCGTGGTAGATCTGTTGGTCTTGGAGAAGCAATGATCACCATGCTGGTGGCAATGGCGCGGAGTGGATTCTTTGGACAACCACCAC
AGTGA
AA sequence
>Lus10000657 pacid=23152233 polypeptide=Lus10000657 locus=Lus10000657.g ID=Lus10000657.BGIv1.0 annot-version=v1.0
MARKRSSTSASQLEEVVTPPSLAKNSRQPGDETNNSSTKLSPATVKTTPSKKAKSSREETPKTTSLKNAKRTPSGGGSRRSSRLHNVGRTTSNTTANKEI
NCIVEDITSTDSEKEEHEQPVVEETGEKSKEELAKLCEEQQKTIDEQQKNIAELKAETDYQISKNALPNERPSDQRYKSLYIDSRKELDVLTKETHQLRI
DIEYARGRSVGLGEAMITMLVAMARSGFFGQPPQ

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
Lus10000657
[exp]
0 1
Lus10014667
[exp]
1.4 0.8392
AT5G41010 NRPE12, NRPD12,... DNA directed RNA polymerase, 7... Lus10030353
[exp]
2.8 0.8323
AT1G54250 NRPE8A, NRPB8A,... RNA polymerase Rpb8 (.1) Lus10013760
[exp]
4.9 0.8090
AT3G53220 Thioredoxin superfamily protei... Lus10026540
[exp]
16.7 0.7232
AT2G03170 ASK14 SKP1-like 14 (.1) Lus10031171
[exp]
21.5 0.7887
AT5G20570 HRT1, ROC1, RBX... REGULATOR OF CULLINS-1, RING-b... Lus10008115
[exp]
25.4 0.6930
AT4G26590 ATOPT5 ARABIDOPSIS THALIANA OLIGOPEPT... Lus10014885
[exp]
26.5 0.6913
AT3G58480 calmodulin-binding family prot... Lus10016219
[exp]
28.3 0.7129
AT3G53220 Thioredoxin superfamily protei... Lus10013827
[exp]
34.1 0.7282
AT5G45190 Cyclin family protein (.1.2) Lus10036192
[exp]
37.0 0.7402

Lus10000657 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.