Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G02800 234 / 6e-75 unknown protein AT1G30050 101 / 5e-24 unknown protein AT5G01970 100 / 8e-24 unknown protein AT2G30530 92 / 7e-21 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014668 [exp] 558 / 0 AT4G02800 262 / 1e-85 unknown protein Lus10022037 [exp] 362 / 3e-125 AT4G02800 276 / 1e-91 unknown protein Lus10042577 [exp] 156 / 4e-46 AT4G02800 109 / 1e-28 unknown protein Lus10031947 [exp] 96 / 5e-22 AT5G01970 263 / 1e-85 unknown protein Lus10034444 [exp] 96 / 9e-22 AT2G30530 268 / 3e-86 unknown protein Lus10019115 [exp] 96 / 1e-21 AT2G30530 267 / 5e-86 unknown protein Lus10035153 [exp] 95 / 2e-21 AT5G01970 264 / 8e-85 unknown protein Lus10035609 [exp] 91 / 3e-20 AT1G30050 187 / 5e-56 unknown protein Lus10003240 [exp] 88 / 1e-18 AT5G01990 610 / 0.0 Auxin efflux carrier family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G209400 [exp] 284 / 4e-94 AT4G02800 291 / 3e-97 unknown protein Potri.002G053100 [exp] 274 / 3e-90 AT4G02800 276 / 3e-91 unknown protein Potri.016G141300 [exp] 103 / 1e-24 AT5G01970 353 / 2e-119 unknown protein Potri.006G111900 [exp] 101 / 2e-23 AT5G01970 352 / 2e-118 unknown protein Potri.013G160100 [exp] 99 / 1e-22 AT2G30530 266 / 8e-85 unknown protein Potri.019G132300 [exp] 97 / 4e-22 AT2G30530 253 / 9e-80 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10000658 pacid=23152230 polypeptide=Lus10000658 locus=Lus10000658.g ID=Lus10000658.BGIv1.0 annot-version=v1.0 ATGGCTACTGCTTCAATCCATTCTCCTTCTCCATCGCTCCAAGATCCTGCCATGCTCTCTTCTCCTCCGCCGTTCAGTCCATCCTCTGATAAGCGCTACT GGAGCACTCTCCGCCGTCGGATCGACTCTATCCTCCAAAAGCGCCACCGTGAATCCAACGATGATGATGCATCCCGAGACAACACTCGGCAGGTCGTCGG AGGGGAATCGATGAAGAAGAAGATCGATGCCAAGAGGAGAAAGAATGACGCTCTGCTTCTCCTCGGAGGCTTCGACTCCATTTCTCATACGCTCTCCTCC CTCTCCGACAATATTGACCACGCTCTACAGGGCGCCAGATCTCTCGCTGAGCCCCCGACCATGACAGAGTTACTCCAGGGGACGATCAACAGCTCCGAGA CTAAACAAGATGACAAATCACGAGAAGTAAGAAATGATGATGATCGTAATGAAAAGACCGGGGTCAAAAGGAAATTGGATGCAGTTGAATCCGATACTAG CTCCGTCGAAGAGGGCAATGATTCGCACAATATTAACAGTAATAAGCTGAAGAAAGCCAAAAATCTCGCGATTTCAATGGCGAAGAAAGCAGCAGCGATA GCAAGGGAGCTGAAGTCAATGAAGTCCGATATGTGTTTTGTGCAAGAGAGATGTTCCCTGTTAGAGGAGGAGAACGGCAGGCTTCGAGATGGTTTCTCTT CCGGGATTCGGCCAGAGGAAGATGATCTGATGAGACTGCAAATGGAGGCGCTGCTTGCTGAGAAATCAAGGCTAGCGAATGAGAATGCCAATCTCAAGAG GGAGAACGAGTGCCTCCACCAGCTTGTAGAGTCCCACCAGCTCACTTCACAGGATCTCTCGGCATCCTACGAAGAACTTGTCCGCGGGATGGGTCTCGAT TTCTCTTCTCCTGATTGCTCGGAGGAGAAGAAGCAAACTGATGTGGATAATCATGGCGATGAACGTGGAGCAAAACGGTCTAGCATTTTGGATTTGTCTA CTTCCCTTGACAAGTTCTTTGAGGAAGAGCAGTAA
AA sequence Show only first row Show all	>Lus10000658 pacid=23152230 polypeptide=Lus10000658 locus=Lus10000658.g ID=Lus10000658.BGIv1.0 annot-version=v1.0 MATASIHSPSPSLQDPAMLSSPPPFSPSSDKRYWSTLRRRIDSILQKRHRESNDDDASRDNTRQVVGGESMKKKIDAKRRKNDALLLLGGFDSISHTLSS LSDNIDHALQGARSLAEPPTMTELLQGTINSSETKQDDKSREVRNDDDRNEKTGVKRKLDAVESDTSSVEEGNDSHNINSNKLKKAKNLAISMAKKAAAI ARELKSMKSDMCFVQERCSLLEEENGRLRDGFSSGIRPEEDDLMRLQMEALLAEKSRLANENANLKRENECLHQLVESHQLTSQDLSASYEELVRGMGLD FSSPDCSEEKKQTDVDNHGDERGAKRSSILDLSTSLDKFFEEEQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G02800			unknown protein		Lus10000658 [exp]	0	1
AT4G02800			unknown protein		Lus10014668 [exp]	1.4	0.9873
AT4G32830		ATAUR1	ataurora1 (.1)		Lus10006033 [exp]	3.5	0.9759
AT3G51280			Tetratricopeptide repeat (TPR)...		Lus10028434 [exp]	3.5	0.9800
AT3G51280			Tetratricopeptide repeat (TPR)...		Lus10041886 [exp]	3.7	0.9803
AT3G15550			unknown protein		Lus10025757 [exp]	3.9	0.9748
AT1G16070	TUB	AtTLP8	tubby like protein 8 (.1.2)		Lus10041617 [exp]	4.9	0.9661
AT3G07610		IBM1	increase in bonsai methylation...		Lus10027890 [exp]	5.1	0.9636
AT4G15830			ARM repeat superfamily protein...		Lus10043416 [exp]	5.2	0.9691
AT1G47230		CYCA3;4	CYCLIN A3;4 (.1.2)		Lus10024822 [exp]	5.3	0.9710
AT3G19590		BUB3.1	BUB \(BUDDING UNINHIBITED BY B...		Lus10003954 [exp]	6.5	0.9441

Compare expression of checked genes

Lus10000658 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.