Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G63060 212 / 8e-69 EDL3 EID1-like 3 (.1) AT5G39360 149 / 3e-44 EDL2 EID1-like 2 (.1) AT5G15440 147 / 2e-43 EDL1 EID1-like 1 (.1) AT4G02440 42 / 0.0001 EID1 EMPFINDLICHER IM DUNKELROTEN LICHT 1, F-box family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028001 [exp] 305 / 3e-105 AT3G63060 312 / 6e-107 EID1-like 3 (.1) Lus10029662 [exp] 161 / 3e-49 AT5G39360 423 / 4e-152 EID1-like 2 (.1) Lus10042699 [exp] 158 / 6e-48 AT5G39360 428 / 4e-154 EID1-like 2 (.1) Lus10025639 [exp] 151 / 2e-45 AT5G39360 429 / 2e-154 EID1-like 2 (.1) Lus10018196 [exp] 108 / 8e-29 AT5G39360 364 / 6e-129 EID1-like 2 (.1) Lus10007870 [exp] 52 / 1e-07 AT4G02440 399 / 9e-140 EMPFINDLICHER IM DUNKELROTEN LICHT 1, F-box family protein (.1) Lus10030373 [exp] 48 / 2e-06 AT4G02440 407 / 8e-143 EMPFINDLICHER IM DUNKELROTEN LICHT 1, F-box family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G125000 [exp] 161 / 3e-49 AT5G39360 418 / 4e-150 EID1-like 2 (.1) Potri.017G090300 [exp] 157 / 8e-48 AT5G39360 415 / 1e-148 EID1-like 2 (.1) Potri.002G205150 [exp] 49 / 6e-07 AT4G02440 371 / 9e-129 EMPFINDLICHER IM DUNKELROTEN LICHT 1, F-box family protein (.1) Potri.014G130000 [exp] 45 / 1e-05 AT4G02440 370 / 2e-128 EMPFINDLICHER IM DUNKELROTEN LICHT 1, F-box family protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10000659 pacid=23157545 polypeptide=Lus10000659 locus=Lus10000659.g ID=Lus10000659.BGIv1.0 annot-version=v1.0 ATGGCGGGAGCTGTGCGTGTACCGAGCTCCAAAGATGCTTTCTGCGCTGTCGAACGGCGGGTCGCCGCCCGCTGCGGATGCAGCCAATTCAGCAATGGAA GCTTCAGATCGGTGAACAATCCGTCGCCGGGACACCTGGCGCAGGCGTCTCGATTCTCCAAGACTTCTGGACGGAGCTTCCTGGCGAAGAATTGTAAAGC GGACTTGCTGTACGTGAGCGACCCGTGCGAGCATTCGACGGGGGAGGAGGAGGACGATTTGGGGGTGTATAGAGGGATATTTCGGGGATTTATGAGGTCG AAGACGCGGGCGTGCCTGATCAGGAGGCAGGCCAGGCTGGAGGAGAAGGTGAGGTGTCCGTACTGCGGCGCAAGGGTCTGGAGCATGACGGCGGCGAGGC TTGTGCCGAGAAGCGCGGCGAAGAGGCTCGGCGCCTCGCAGGACGGCGGCGTGGAGTACTTCGTATGTGTCAACGGGCACCTCCACGGGATGTGCTGGCT GGTACCGCTGTCCTCTGATGAAGAGGGAGCTGTATCGGATCTGGAAGACGGAGACGGCGGGGATGACAGCGACAGCGACGGCGACGGCGACGGCGACGGT GGGGGTTATGTACGGACGGTGGAGAACGGGAGCACTACTGGCTCGACAGGGGAAGACGCAACGGCGAAGTGA
AA sequence Show only first row Show all	>Lus10000659 pacid=23157545 polypeptide=Lus10000659 locus=Lus10000659.g ID=Lus10000659.BGIv1.0 annot-version=v1.0 MAGAVRVPSSKDAFCAVERRVAARCGCSQFSNGSFRSVNNPSPGHLAQASRFSKTSGRSFLAKNCKADLLYVSDPCEHSTGEEEDDLGVYRGIFRGFMRS KTRACLIRRQARLEEKVRCPYCGARVWSMTAARLVPRSAAKRLGASQDGGVEYFVCVNGHLHGMCWLVPLSSDEEGAVSDLEDGDGGDDSDSDGDGDGDG GGYVRTVENGSTTGSTGEDATAK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G63060		EDL3	EID1-like 3 (.1)		Lus10000659 [exp]	0	1
AT3G27470			Protein of unknown function (D...		Lus10022287 [exp]	5.3	0.8479
AT4G16195			Plant self-incompatibility pro...		Lus10008107 [exp]	8.9	0.8999
AT5G04870		AK1, ATCPK1, CP...	calcium dependent protein kina...		Lus10029358 [exp]	12.9	0.8929
					Lus10019410 [exp]	17.5	0.8835
AT5G49340		TBL4	TRICHOME BIREFRINGENCE-LIKE 4 ...		Lus10037726 [exp]	23.0	0.8797
AT5G06760		AtLEA4-5, LEA4-...	Late Embryogenesis Abundant 4-...		Lus10016273 [exp]	24.7	0.8722
AT5G48140			Pectin lyase-like superfamily ...		Lus10013780 [exp]	25.8	0.8696
AT2G45550		CYP76C4	"cytochrome P450, family 76, s...		Lus10008935 [exp]	25.8	0.8730
AT2G28085			SAUR-like auxin-responsive pro...		Lus10016130 [exp]	26.7	0.8671
AT5G57150	bHLH	bHLH035	basic helix-loop-helix (bHLH) ...		Lus10036068 [exp]	31.4	0.8392

Compare expression of checked genes

Lus10000659 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.