Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G02900 1058 / 0 ERD (early-responsive to dehydration stress) family protein (.1) AT3G21620 993 / 0 ERD (early-responsive to dehydration stress) family protein (.1) AT4G22120 957 / 0 ERD (early-responsive to dehydration stress) family protein AT1G11960 956 / 0 ERD (early-responsive to dehydration stress) family protein (.1) AT4G04340 947 / 0 ERD (early-responsive to dehydration stress) family protein (.1), ERD (early-responsive to dehydration stress) family protein (.2), ERD (early-responsive to dehydration stress) family protein (.3) AT1G62320 938 / 0 ERD (early-responsive to dehydration stress) family protein (.1) AT4G15430 910 / 0 ERD (early-responsive to dehydration stress) family protein (.1), ERD (early-responsive to dehydration stress) family protein (.2) AT1G32090 800 / 0 early-responsive to dehydration stress protein (ERD4) (.1) AT3G01100 360 / 8e-114 ATHYP1, HYP1 ARABIDOPSIS THALIANA HYPOTHETICAL PROTEIN 1, hypothetical protein 1 (.1.2) AT1G69450 332 / 6e-103 Early-responsive to dehydration stress protein (ERD4) (.1), Early-responsive to dehydration stress protein (ERD4) (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028000 [exp] 1425 / 0 AT4G02900 1116 / 0.0 ERD (early-responsive to dehydration stress) family protein (.1) Lus10035300 [exp] 994 / 0 AT3G21620 1146 / 0.0 ERD (early-responsive to dehydration stress) family protein (.1) Lus10030024 [exp] 993 / 0 AT3G21620 1147 / 0.0 ERD (early-responsive to dehydration stress) family protein (.1) Lus10020032 [exp] 972 / 0 AT4G22120 1186 / 0.0 ERD (early-responsive to dehydration stress) family protein Lus10015551 [exp] 964 / 0 AT4G22120 1183 / 0.0 ERD (early-responsive to dehydration stress) family protein Lus10002996 [exp] 955 / 0 AT4G22120 1087 / 0.0 ERD (early-responsive to dehydration stress) family protein Lus10024477 [exp] 950 / 0 AT1G11960 1072 / 0.0 ERD (early-responsive to dehydration stress) family protein (.1) Lus10002133 [exp] 848 / 0 AT1G32090 1136 / 0.0 early-responsive to dehydration stress protein (ERD4) (.1) Lus10005223 [exp] 351 / 4e-110 AT3G01100 895 / 0.0 ARABIDOPSIS THALIANA HYPOTHETICAL PROTEIN 1, hypothetical protein 1 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G009900 [exp] 986 / 0 AT4G22120 1142 / 0.0 ERD (early-responsive to dehydration stress) family protein Potri.014G156100 [exp] 979 / 0 AT3G21620 1104 / 0.0 ERD (early-responsive to dehydration stress) family protein (.1) Potri.002G226800 [exp] 973 / 0 AT3G21620 1105 / 0.0 ERD (early-responsive to dehydration stress) family protein (.1) Potri.004G006100 [exp] 970 / 0 AT4G22120 1113 / 0.0 ERD (early-responsive to dehydration stress) family protein Potri.004G006000 [exp] 961 / 0 AT4G22120 1139 / 0.0 ERD (early-responsive to dehydration stress) family protein Potri.004G005900 [exp] 936 / 0 AT4G22120 1151 / 0.0 ERD (early-responsive to dehydration stress) family protein Potri.003G099800 [exp] 827 / 0 AT1G32090 1094 / 0.0 early-responsive to dehydration stress protein (ERD4) (.1) Potri.001G133800 [exp] 823 / 0 AT1G32090 1061 / 0.0 early-responsive to dehydration stress protein (ERD4) (.1) Potri.004G115800 [exp] 365 / 9e-116 AT3G01100 866 / 0.0 ARABIDOPSIS THALIANA HYPOTHETICAL PROTEIN 1, hypothetical protein 1 (.1.2) Potri.010G164100 [exp] 360 / 1e-113 AT1G69450 844 / 0.0 Early-responsive to dehydration stress protein (ERD4) (.1), Early-responsive to dehydration stress protein (ERD4) (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0416 [flax] [poplar] Anoctamin-like PF02714 [flax] [poplar] RSN1_7TM Calcium-dependent channel, 7TM region, putative phosphate
Representative CDS sequence Show only first row Show all	>Lus10000660 pacid=23157546 polypeptide=Lus10000660 locus=Lus10000660.g ID=Lus10000660.BGIv1.0 annot-version=v1.0 ATGGCTACACTCGAAGATATTTGCTACTCAGCAGTTATCAATCTTCTATCTGCTATTGCTTTCCTTTTAGCATTTGCAATGCTAAGGCTTCAGCCTGTAA ACGACAGAGTTTACTTTCCGAAGTGGTACCTTAAAGGGATAAGAGGTAGCCCTACGCACCATGGGGGGTTTATGAAGAAGTTTCTCAATGTGGATCCTAG AACCTACGTACGATTTTTGAACTGGATGCCCGCAGCTTTGAGAATGCCGGAACCTGAACTCATTGATCACGCTGGACTTGACTCAGTAGTCTATATACGG ATTTACCTTATGGGGTTGAAAATATTTGTTCCTATAACATTACTGTCCTTTGCGGTTTTGGTCCCGGTCAATTGGACTGGGGGAACACTAGAGAAGATTA AAGACTTGACGTTCAGTGACATTGACAAGCTGTCAATATCTAACATCCCAGAAAATTCTCCACGGTTCTGGGCACACACAGTGATGGCATATGTCTTCAC ATTTTGGACATTCTATGTGATCTACAATGAGTACAAGGCAGTAGCTAACATGCGGCTGCAGTTTTTGGCTGGGGAAAATCGTCGTGCTGACCACTTCACA GTTCTTGTGAGAAATGTTCCCGCAGATCCAGATGAATCAGTGACAGATCACGTTGAGCACTTCTTCTGTGTGAATCATCCAGAACACTATCTCCTTCACC AGGTAGTGTACAATGCAAACAAGCTTGCAGATGTGGTTGCAGCAAAGAAGAGCATGAAGAATAGGTTAACCTATTATCAGAACAAATTTGAAAGAAATCC ATCTAAAAGGCCAATCACAAAGGCAGGCCTAATGGGTCTTATTGGGGAAAAAGTAGATGCAATTGAGTACTACGAATCCGAGATTGAGAAGTTGACCAAA GAGGAAGAAATGGAAAGAGGGAAGGTTCTGAGTGATGCTAATGCTGTGATACCAGCAGCCTTTGTTTCTTTCAGATCACGATGGGCAGCTGCCGTTTGTG CACAAACTCAGCAATCAAGCAACCCGACGATATGGCTCTCCGAAAGGGCTCCTGAGCCACGTGATGTCTACTGGAACAACCTTGCAATACCTTATGTTGA GCATACTATCCGGAGGTTTCTTATGGCAGTAGCTCTCTTCTTCTTGATTTTCTTCTTCGTCATTCCCATCGCAATTGTGCAGTCGCTAGCCACCATTGAA GGAATTGAGAAGGCTTTTCCTTTCTTGAAGCCCCTTATAGAAGTGGAATCCGTCAAATCCATAGTCCAAGGGTTTCTTCCAGGAATCGCTTTGAAAATAT TCCTCATCATACTTCCAACTGTACTAATGTTCATGGCCAAAATCGAAGGATACCACTCACTTTCATCGTTGGATAGGCGAGCAGCTTCCAAGTATCACTT GTTCCTTTTAATCAACGTCTTCCTTGGCAGCATTATCACAGGAACAGCTCTAGAGCAACTCAAATCTTTCATGAAACAGTCTGCATCCGAAATCCCGCAG ACTATTGGTGTGTCGATGCCAATGAGAGCGACGTTCTTCATTACGTACATAATGGTCGATGGATGGTCAGGAATTGCAGCAGAAATTCTGAGATTGGTGC CATTAGTCATATTCCACTTGAAGAACTGGTTCTTGGTAAAGACGGAGCAAGATAGAGAGGAAGCAATGGATCCTGGTAGCATATGCTTCCCCATATCCGA GCCTCGGATACAGCTCTACTTCTTGATGGGTTTTGTTTATGCTCCAGTCACTCCCATGCTCCTCCCTTTCATCCTTGTCTTCTTCGCCTTCGCCTATGTC ATCTTCCGTCATCAGATCATCAACGTCTACGACCAGAAATACGAGAGTGGAGCTGCATACTGGCCAGACGTGCATCGACGGTTGATAATTGGATTGGTGA TATCTCAGCTACTACTAATGGGATTGCTGAGCACAAAGGGTGCAGAGGAGCTTACACCTTGTCTCGTAGCTCTCCCTGTTCTCACCTTCTGGTTCCATAA GCTCTGCAAAGGCCGCTTCGAATCTGCATTCGTCAAATTCCCATTACAGGAAGCAGTGGTGAGGGACACGCTGGAGAGGGCCACGGAGCCGAATCTGAAC CTGAGAATGTATCTTCAGGATGCTTATGTCCATCCAATTTTCAAAGACGATCCGACCGATAACGCCGAGATGGTGATGGATGAGTACGATGAAGATAACC CGCTTGTTGCTACTAAGAGAAGCAGTAAGTTTGTGTCGGATGTCAGTTCTGGGACTGGTTCCAAATAG
AA sequence Show only first row Show all	>Lus10000660 pacid=23157546 polypeptide=Lus10000660 locus=Lus10000660.g ID=Lus10000660.BGIv1.0 annot-version=v1.0 MATLEDICYSAVINLLSAIAFLLAFAMLRLQPVNDRVYFPKWYLKGIRGSPTHHGGFMKKFLNVDPRTYVRFLNWMPAALRMPEPELIDHAGLDSVVYIR IYLMGLKIFVPITLLSFAVLVPVNWTGGTLEKIKDLTFSDIDKLSISNIPENSPRFWAHTVMAYVFTFWTFYVIYNEYKAVANMRLQFLAGENRRADHFT VLVRNVPADPDESVTDHVEHFFCVNHPEHYLLHQVVYNANKLADVVAAKKSMKNRLTYYQNKFERNPSKRPITKAGLMGLIGEKVDAIEYYESEIEKLTK EEEMERGKVLSDANAVIPAAFVSFRSRWAAAVCAQTQQSSNPTIWLSERAPEPRDVYWNNLAIPYVEHTIRRFLMAVALFFLIFFFVIPIAIVQSLATIE GIEKAFPFLKPLIEVESVKSIVQGFLPGIALKIFLIILPTVLMFMAKIEGYHSLSSLDRRAASKYHLFLLINVFLGSIITGTALEQLKSFMKQSASEIPQ TIGVSMPMRATFFITYIMVDGWSGIAAEILRLVPLVIFHLKNWFLVKTEQDREEAMDPGSICFPISEPRIQLYFLMGFVYAPVTPMLLPFILVFFAFAYV IFRHQIINVYDQKYESGAAYWPDVHRRLIIGLVISQLLLMGLLSTKGAEELTPCLVALPVLTFWFHKLCKGRFESAFVKFPLQEAVVRDTLERATEPNLN LRMYLQDAYVHPIFKDDPTDNAEMVMDEYDEDNPLVATKRSSKFVSDVSSGTGSK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G02900			ERD (early-responsive to dehyd...		Lus10000660 [exp]	0	1
AT5G60370			unknown protein		Lus10023343 [exp]	2.6	0.8829
					Lus10037765 [exp]	3.0	0.8420
AT4G32050			neurochondrin family protein (...		Lus10001536 [exp]	4.5	0.8488
AT2G42990			GDSL-like Lipase/Acylhydrolase...		Lus10029958 [exp]	5.3	0.8396
AT5G10140	MADS	FLF, AGL25, FLC	FLOWERING LOCUS F, FLOWERING L...		Lus10003123 [exp]	8.3	0.7678
AT4G23840			Leucine-rich repeat (LRR) fami...		Lus10003886 [exp]	8.9	0.8029
AT5G27640		ATTIF3B1, ATEIF...	EUKARYOTIC TRANSLATION INITIAT...		Lus10016562 [exp]	12.6	0.8343
AT5G04930		ALA1	aminophospholipid ATPase 1 (.1...		Lus10008947 [exp]	13.0	0.7874
AT2G20140		RPT2b	regulatory particle AAA-ATPase...		Lus10022834 [exp]	15.9	0.7570
AT4G17140			pleckstrin homology (PH) domai...		Lus10006816 [exp]	17.5	0.7801

Compare expression of checked genes

Lus10000660 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.