Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G03310 770 / 0 ATISA2, ISA2, DBE1, BE2 BRANCHING ENZYME 2, ARABIDOPSIS THALIANA ISOAMYLASE 2, debranching enzyme 1 (.1.2) AT4G09020 338 / 7e-104 ATISA3, ISA3 isoamylase 3 (.1) AT2G39930 285 / 7e-84 ATISA1, ISA1 ARABIDOPSIS THALIANA ISOAMYLASE 1, isoamylase 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027999 [exp] 1401 / 0 AT1G03310 833 / 0.0 BRANCHING ENZYME 2, ARABIDOPSIS THALIANA ISOAMYLASE 2, debranching enzyme 1 (.1.2) Lus10021586 [exp] 281 / 2e-82 AT2G39930 1211 / 0.0 ARABIDOPSIS THALIANA ISOAMYLASE 1, isoamylase 1 (.1) Lus10017150 [exp] 192 / 1e-52 AT2G39930 723 / 0.0 ARABIDOPSIS THALIANA ISOAMYLASE 1, isoamylase 1 (.1) Lus10036474 [exp] 181 / 4e-47 AT4G09020 1005 / 0.0 isoamylase 3 (.1) Lus10017149 [exp] 48 / 7e-06 AT2G39930 296 / 3e-96 ARABIDOPSIS THALIANA ISOAMYLASE 1, isoamylase 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G219900 [exp] 867 / 0 AT1G03310 919 / 0.0 BRANCHING ENZYME 2, ARABIDOPSIS THALIANA ISOAMYLASE 2, debranching enzyme 1 (.1.2) Potri.002G100900 [exp] 324 / 1e-98 AT4G09020 1111 / 0.0 isoamylase 3 (.1) Potri.006G070800 [exp] 283 / 5e-83 AT2G39930 1212 / 0.0 ARABIDOPSIS THALIANA ISOAMYLASE 1, isoamylase 1 (.1) Potri.018G132500 [exp] 281 / 1e-82 AT2G39930 1217 / 0.0 ARABIDOPSIS THALIANA ISOAMYLASE 1, isoamylase 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0058 [flax] [poplar] Glyco_hydro_tim PF00128 [flax] [poplar] Alpha-amylase Alpha amylase, catalytic domain CL0369 [flax] [poplar] GHD PF02922 [flax] [poplar] CBM_48 Carbohydrate-binding module 48 (Isoamylase N-terminal domain)
Representative CDS sequence Show only first row Show all	>Lus10000661 pacid=23157549 polypeptide=Lus10000661 locus=Lus10000661.g ID=Lus10000661.BGIv1.0 annot-version=v1.0 ATGAGAACTCTCTCTCCATCGCTGTCAATTTGCGGGCAGCTCAAGTCTGCCAAACTCAATTTCGTTTCACATTGTGCGATAGCTGGAAACGGGTCATTTG GAATTCGAGGAATCGGTGTAGGATCGAATGTCTCACTGAGAAAGCTTAGTTTGGGAGCAGTGAATGCTAAGTCGCGGCCTTCTTTTCGAGAGATCGTCAC TCCTCCTCCGTCCATTGAAGTGGATGAGCTGAAGAAAGAAGCTTCTTCTTCGACTTACCTGTTTAGAACCGAAGTTGGCGGCGGTTCAGTGAAGGTTTCC ATTTCGAAGAACAAGAAGAAGGATAAGTATGTGGTGTATGTTGAAGTTTCATCGTTGGAATTGGGAATCAGTGACTGTACGGTTACGTTGGTTTGGGGAA TCTGCAGATCTGATTCGTTAGATGAATCAACAACCGTGGAGAACTCCTCGTTGCTGCAAAGTACAATTGGTGGTGGATTCTCAGGTGAGTTGGAATTCGA ATTAGGGCAATCCCCTTTCTATCTCTCGTTTGTTCTGAAATCCAGTGAGGTGGAGATTAGGAGTCACAGGAAGACGAAATTCTGTGTCCCGGTTGGATTC GGTAGAGGTGATCCATCTCCATTGGGGATTTCCTTTTCAGCTGATGGTTCTGTGAACTTCGCATTCTTTTCGAGGAATGCAGAAAAGGTTGTTTTGTGCC TGTACAGTAATGACAAAAAACCTGCTGTGGAGATTGATCTTGATTCGTATGTTAACAAAACTGGTAATATCTGGCATGCATCGTTCGAAGATGTCTCGAG CTTTCGAAGTTACGGTTTCAGATGTGATAAAGGAGGGACTGGGCAAGCTCTTTTGGATCCTTATGCTAAAGTTACTGGCAGTTATCTGGGGAGATTATGC AAGGAGCCGGATTTCGACTGGAATGGCGATGTTCGCCCTAACTTGCCATTAGAGAAGCTGGTTGTTTACAGGCTGAACGTGAAGCGATTTACGCAGCATG GCTCTAGTCTGCTTTCTAGTGATGATGTTGCTGGGAGTTTTGCTGGTGTGGCTGAGAAAGTGAAGCATTTTAAGGATCTTGGTGTAAATGCAGTTTTGAT AGAGCCAGTTTTTCCCTTTGATGAGCACAAAGGCCCATATTTTCCTTACCATTTCTTTTCGCCATCGAACCAGTATGGATCCCGGTCTTCCAGTGACTCC GTGTCCGCAATTAGCTCAATGAAAGAGATGGTGAAGACATTACACGACAGTGGGATAGAGGTTTTCATGGAGGTTGTTTTCAGCCATACCGCTGAATCTC GAGCGTTGCAAGGTATCGACGACTCGTCCTATTATTATGCAGATAATAGTTCATTGAATTGCAATTACCCTGTTGTGACGAGGATGATATTGGATAGTCT TAGACATTGGGTAACTGAGTTTCATATCGATGGTTTCTGCTTCATGAACGCTTCGTCGCTGCTCAGAGGTTTCCATGGGGAGTCGTTATCTCGACCCCCT TTGATTGAATCAATTGCATTCGAACCGGTTCTGTCCAAAACCAAGATCATTGCAGATTTCTGGGATCCCCAAGAGATGCTGGCGAAGAAAGAAACTCGCT TTCCGCATTGGAAGAGATGGGCCGAAATGAACACGAAATTCTGTTACGATGTGCGAAACTTTTTGAAAGGTGAAGGTCATCTCAGCTGCCTTGCAACTCG GCTTTGCGGGAGTGGAGACTTTTTCTCGAGCGGACGAGGGCCTTCCCACGGTTTCAATTTTATTGCCCGGAATTCCGGACTTTCTCTAGTGGACCTCGTC AGCTTTAGTAGTGATAATAAGGTAGCTCATGAACTCAGCTGGAACTGTGGGGAAGAAGGTCCTACAGGGAAAACTCTTGTTCTCGAAAGACGGCTTAAAC AAATTCGCAATTATCTCTTCATTTTGTTCGTTTCGCTCGGTGTACCAGTTCTGAACATGGGCGATGAATGTGGCCAATCTTCCGGGGGATCGATTTCCTA CAGCGATCGGAAACCACTAGACTGGAACGCACTCTCGACCGGGTTTGGCAGCCAAACCACCGAGTTCGTCTCGTTCTTGAGCGAATTGAGAGCGAGAAGA AGCGACCTCCTTCAGAAAGGGAACTTCTTGGACGAAAAGAACATTAAATGGTACGGAAACGACCAATCTCCACCGAAATGGGACGATCCATCGACCAAAT TCTTGGCGATGGGGTTGAAGACGAATAAGCCTGGAGATGCTAAGGGCGATTTATTCATGGCGTTTAATGCAGGTCGAAAATCGGAAGATGTTATTCTACC TATTGCTCCCGAAGGGATGAAATGGCATCGACTCGTTGATACAGCTCTCCCCTATCCAGGGTTCTTCTCGGAGACCGGCGAGATTGCTGATGAGGATATG GAAGGATCAGTTGTGTATGAAATGAGATCTCACAGCTGTGTTTTGTTCGAAGCTAGAAGTAGTATTTCCTCTGATTTGCTTCCTTTGTAA
AA sequence Show only first row Show all	>Lus10000661 pacid=23157549 polypeptide=Lus10000661 locus=Lus10000661.g ID=Lus10000661.BGIv1.0 annot-version=v1.0 MRTLSPSLSICGQLKSAKLNFVSHCAIAGNGSFGIRGIGVGSNVSLRKLSLGAVNAKSRPSFREIVTPPPSIEVDELKKEASSSTYLFRTEVGGGSVKVS ISKNKKKDKYVVYVEVSSLELGISDCTVTLVWGICRSDSLDESTTVENSSLLQSTIGGGFSGELEFELGQSPFYLSFVLKSSEVEIRSHRKTKFCVPVGF GRGDPSPLGISFSADGSVNFAFFSRNAEKVVLCLYSNDKKPAVEIDLDSYVNKTGNIWHASFEDVSSFRSYGFRCDKGGTGQALLDPYAKVTGSYLGRLC KEPDFDWNGDVRPNLPLEKLVVYRLNVKRFTQHGSSLLSSDDVAGSFAGVAEKVKHFKDLGVNAVLIEPVFPFDEHKGPYFPYHFFSPSNQYGSRSSSDS VSAISSMKEMVKTLHDSGIEVFMEVVFSHTAESRALQGIDDSSYYYADNSSLNCNYPVVTRMILDSLRHWVTEFHIDGFCFMNASSLLRGFHGESLSRPP LIESIAFEPVLSKTKIIADFWDPQEMLAKKETRFPHWKRWAEMNTKFCYDVRNFLKGEGHLSCLATRLCGSGDFFSSGRGPSHGFNFIARNSGLSLVDLV SFSSDNKVAHELSWNCGEEGPTGKTLVLERRLKQIRNYLFILFVSLGVPVLNMGDECGQSSGGSISYSDRKPLDWNALSTGFGSQTTEFVSFLSELRARR SDLLQKGNFLDEKNIKWYGNDQSPPKWDDPSTKFLAMGLKTNKPGDAKGDLFMAFNAGRKSEDVILPIAPEGMKWHRLVDTALPYPGFFSETGEIADEDM EGSVVYEMRSHSCVLFEARSSISSDLLPL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G03310		ATISA2, ISA2, D...	BRANCHING ENZYME 2, ARABIDOPSI...		Lus10000661 [exp]	0	1
AT5G08740		NDC1	NAD(P)H dehydrogenase C1 (.1)		Lus10014555 [exp]	4.2	0.8414
AT4G39952			Pentatricopeptide repeat (PPR)...		Lus10038138 [exp]	11.0	0.7175
AT1G09010			glycoside hydrolase family 2 p...		Lus10004484 [exp]	11.9	0.8228
AT5G57030		LUT2	LUTEIN DEFICIENT 2, Lycopene b...		Lus10017156 [exp]	15.4	0.8246
AT5G01030			Protein of unknown function (D...		Lus10021110 [exp]	16.0	0.8142
AT1G79080			Pentatricopeptide repeat (PPR)...		Lus10031216 [exp]	23.7	0.8144
AT3G19170		ATPREP1, ATZNMP	presequence protease 1 (.1.2)		Lus10014039 [exp]	26.3	0.8019
AT3G62660		GATL7	galacturonosyltransferase-like...		Lus10000262 [exp]	27.1	0.7915
AT5G03800		EMB166, EMB175,...	embryo defective 1899, EMBRYO ...		Lus10008637 [exp]	31.4	0.7991
AT5G48730			Pentatricopeptide repeat (PPR)...		Lus10022787 [exp]	32.3	0.8064

Compare expression of checked genes

Lus10000661 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.