Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G48120 280 / 2e-94 PAC pale cress protein (PAC) (.1), pale cress protein (PAC) (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028033 [exp] 99 / 2e-25 AT2G48120 91 / 6e-22 pale cress protein (PAC) (.1), pale cress protein (PAC) (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G138500 [exp] 298 / 1e-101 AT2G48120 343 / 2e-118 pale cress protein (PAC) (.1), pale cress protein (PAC) (.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10000662 pacid=23157550 polypeptide=Lus10000662 locus=Lus10000662.g ID=Lus10000662.BGIv1.0 annot-version=v1.0 ATGCCTAAGGAGTATTATGATGATGAATGGCAAAAAGAACAGCGAGAAAAGGCTAAAGAGTTGGAGAGGCAAAGGCAGCTGGAAGATGAAGAAGAGGAGA GGAAGATTGACGAGTATCGTGAAATTGGGACCAGGCTTAAAGGCTATCCTGAAGAAGATCTTATTAAAGCTAAGAAACTCATCTCAAGCTTCATTAGAGC TGCTGAAGAAGTGGAACAGAAAATTGAAGAAGCTGCTGAGAAAGGGGAGCTGAATGAACTTGTCCTGATGGTCATTTGGAATCGCCTTGATCTTGCTCGA CGAGATGAAGAGAAAGATGTCATCAGAAGTCTTGATCTTTTGTACAGGAGAGTTGAGACCGAGATTTTGAAGCGGGAGGCGACTCCTGCAATGCGACTTC TCAACGATATGCTGAATATGCATGATGGTTTCAACGACGAAGGGTGGCTGAAGAACTGCAAGAAGCTCATGATCGATACGTTTCCACGTGAAGATCCATT CACCATTCTTGTCCCGGCAGGTTTCGATATCAATGAGCATGAAGGGCCAATACCAATGCCTGCGGACGACGATGATGATGTTCTTTTACGGGTTGATTTC GTGAGAGAGGTTGACGAGTTGCTGCAACAAGTGAAGGCTGAGCAAAATGAAGGATATAAAGCAGGAAAAAAGCTTGATCCTGAAGCCATAGCCAAAAAAC TGAAGCAGCAAGAGAAGCAACGTACAATCCACAAGGTTGAAGCTCTGCTAGAGCTTGCGGTTAACCTCAAATGGTAG
AA sequence Show only first row Show all	>Lus10000662 pacid=23157550 polypeptide=Lus10000662 locus=Lus10000662.g ID=Lus10000662.BGIv1.0 annot-version=v1.0 MPKEYYDDEWQKEQREKAKELERQRQLEDEEEERKIDEYREIGTRLKGYPEEDLIKAKKLISSFIRAAEEVEQKIEEAAEKGELNELVLMVIWNRLDLAR RDEEKDVIRSLDLLYRRVETEILKREATPAMRLLNDMLNMHDGFNDEGWLKNCKKLMIDTFPREDPFTILVPAGFDINEHEGPIPMPADDDDDVLLRVDF VREVDELLQQVKAEQNEGYKAGKKLDPEAIAKKLKQQEKQRTIHKVEALLELAVNLKW

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G48120		PAC	pale cress protein (PAC) (.1),...		Lus10000662 [exp]	0	1
AT4G35760			NAD(P)H dehydrogenase (quinone...		Lus10028389 [exp]	1.7	0.8664
AT3G04650			FAD/NAD(P)-binding oxidoreduct...		Lus10022002 [exp]	2.0	0.8610
AT2G25870			haloacid dehalogenase-like hyd...		Lus10038133 [exp]	4.5	0.8567
AT5G59240			Ribosomal protein S8e family p...		Lus10003761 [exp]	5.5	0.8297
AT3G09250			Nuclear transport factor 2 (NT...		Lus10021504 [exp]	6.5	0.8605
AT1G78910			Pseudouridine synthase family ...		Lus10034804 [exp]	7.7	0.8546
AT2G13600			Pentatricopeptide repeat (PPR)...		Lus10000213 [exp]	8.1	0.8422
AT1G78010			tRNA modification GTPase, puta...		Lus10029578 [exp]	9.8	0.8360
AT2G22650			FAD-dependent oxidoreductase f...		Lus10036320 [exp]	12.6	0.8517
AT1G73090			unknown protein		Lus10037331 [exp]	13.0	0.8087

Compare expression of checked genes

Lus10000662 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.