Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G48110 1349 / 0 MED33B, REF4 reduced epidermal fluorescence 4 (.1) AT3G23590 1311 / 0 MED33A, RFR1 REF4-related 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027998 [exp] 2306 / 0 AT2G48110 1370 / 0.0 reduced epidermal fluorescence 4 (.1) Lus10029646 [exp] 1887 / 0 AT2G48110 1424 / 0.0 reduced epidermal fluorescence 4 (.1) Lus10034021 [exp] 1457 / 0 AT3G23590 1721 / 0.0 REF4-related 1 (.1) Lus10004434 [exp] 1449 / 0 AT3G23590 1722 / 0.0 REF4-related 1 (.1) Lus10041229 [exp] 1335 / 0 AT3G23590 1595 / 0.0 REF4-related 1 (.1) Lus10042689 [exp] 399 / 8e-125 AT2G48110 324 / 4e-98 reduced epidermal fluorescence 4 (.1) Lus10028033 [exp] 0 / 1 AT2G48120 91 / 6e-22 pale cress protein (PAC) (.1), pale cress protein (PAC) (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G215600 [exp] 1704 / 0 AT2G48110 1371 / 0.0 reduced epidermal fluorescence 4 (.1) Potri.014G138400 [exp] 1680 / 0 AT2G48110 1424 / 0.0 reduced epidermal fluorescence 4 (.1) Potri.008G201600 [exp] 1472 / 0 AT3G23590 1682 / 0.0 REF4-related 1 (.1) Potri.016G142500 [exp] 881 / 0 AT3G23590 871 / 0.0 REF4-related 1 (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10000663 pacid=23157551 polypeptide=Lus10000663 locus=Lus10000663.g ID=Lus10000663.BGIv1.0 annot-version=v1.0 ATGATGGCGGCGGTGTCCGTACAGCCTCTTCCGCAGATCCTGTGGGACTCGGTCCTCCAATTCACCAAATCAGCACAGCAGAAGAACACCGACCCGCTCC AATGGGCGATTCAGCTCAGCTCCAGTCTCGCTTCCGCCGGCGTCGCTTTACCTTCCGCCGATATCGCCGACCTCTTAGTCTCCCACATCTGCTTCGAAAA CCATGTCCCTATCGCCTGGAAGTTGCTCGAGAAAGCCCTCTCTGTCAAGATCGTCCCTCCCATGCTCGTCCTCGCCCTTCTTTCCACCAGGGCGATTCCG AATCGACGTTTGCATCCTACAGCTTACAGACTCTACATGGAGCTTGTCAGACGACATGCTTTTGCATTTTCGTCCGAAATCAGTGGTCCGAATTCCGCTA AGATGATGAAATTCATAGACGATGTGCTTCATCTCTCTGATGTGTTTCAACTTGAAGCGACTGAACCAGGGGTTTTTCTAGTTCAATTCTTGTTTTCAGT TGTTTGGCAGCTGGTTGATGCTTCATTGGACGATGAAGGGCTACTGGAACTTACATTAGAGAAGAAATCACGATGGCTCCAGGCAGCAGAAGATATGGAG ATAGATGGCTTTGCTGACAAAAGAAGTGAGCATAATGAAGGGGTGGTGAAAGGAAATACTATAATGGCTATTGAGCTTATTGGGGAGTTCTTGCGGACTA GATTTACTTCAAGGATTCTTTACCTGGCTTTTGCAAACATGCCTTCGCATTGGGGAAGCTTCTCTCAGGGGATGCAAACACTTGTAGCTAACTCGGTAGC TTTAAGAAGTTCGAAACTTCTCTCGCCAGAGAACCTTGAGCAGCTGTTATCCAAAACAACTGTACCTTTCCATCGTTTTTTCAAGACAAAGTTACAGTTG GAGTGTCATGCTAGTATATCGTCTACCTCTATTGAATCCTCAGCCGGTCAATGGCATGGGATGAGCCAGTCCGAACTCTGGCTTCCTATTGATCTCTTTC TCGAAGAATGCATGGATGGCTCGCAACTGGCTGTTGTTAGTGCTATAGAGAACCTTGTCGGGCTGGTTAAATCTTTGCGGGCTATCAATGGCTGTAAATG GCAGGATACCTTTCTGGGACTATGGGCTGCAGCTTTACGTCTTGTTCAAAGGGAGAGAGATCCCCGTGAGGGTCCTGATCCTCGTCTTGATACCTGCTTG TGCTTGCTATTGTCTGTTACAACAATTACTGTCGCTGAAATTATTGAGGAGGAAGAGAGTGAACTGGTTGATGTCACTCCATGCTACCCCGGCATTCAAA AGAAAGAGAATCAGGGTCCAGTCACATGCCGTGAAGGTTTAGTTTCCGCTTTACAAATATTGGGCGATTACGAAGGACTGCTGACTCCACCTCAATCTGT CGCTCCCTTAGCAAATCAAGCTGCTGCAAAGGCAACTGTCTTCATCTCTGGCCTTGCTACTAATAATGGGTATTATGAGAATGTGAGCTTGAATGACATT CCGATTGATTGTTCTGGTAACCTGAGGCATCTAATTGTTGAAGCTTGCATTTCAAGAAATGTGTTAGACACATCTGCGTACTTATGGCCAGGTTATGTTG GTGCATGCACCAGTCAGGTCCCCAGTCAGATGCCTTGTTGGTCATCGCTGATGAAAGGTTCAGCACTAACGCCTGCAATGATGAGCACTTTGGTTGCAAC TCCAGCTTCCTGCTTATCAGAAATCGAGAAAATCTATGAGATTGCGGTCAATGGTTCCAATGATGAGAAGATATCAGCTGCAATCATTCTTTGTGGGGCG TCTCTACTTCGTGGTTGGAACGTTCAGGACCACACAATACTTTTTATCATAAAATTGCTGTCACCACCAGTTCCAGAAGATTCTACACGGAGTCAAAGCC ATCTAATTGATTACGCTCCATTGCTTTATGTTCTTCTCCTTGGAATGTCACCGGTGGACTGTGTCCAGATATTATCCTTGCATGGCTTGGCTCCATTGCT TGCAGGTGCACTGATGCCAATCTGTGAGGTCTTTGGATCAATTGCTCCAGATACCACGTGGACTCTCCCAACAGGGGAAGAAGTCTCTTGCCATGCTCTC TTCTCATGTGCATTTTCGCTGCTCGTGAGATTGTGGAGATTCCATTTTCCGCCTTCAGATCAAGTAATGGGAGATGTTACATCAGTGGGCTCACAATTAA GCCCTGACTACTTATTGATGGTACGGAATTCTCGGCTAGCAGCCTTTGGAACTTCACCTAGGGATCAGATTAGACTAAAGAGGTTCTCACAAAAGCTAAT TCTGTCGAGAGATCCTATATTCATGGACTCTTTCCCGAAACTAAAGATCTGGTACCGGCATCATTTGGAATGCATGTCTTGTGCCTTCTCTGGCCTTGTA CCCGGGACTCCTGTTCATCAGATTGTTGAGGCACTGCTCAAAATCATGTTCAGAAAGATTAACCGAAATTCCCAGCCGGTGACCGCTACATCTTCAGGAA GTAGTAACTCATCTGGCCCTGCAGCTGAGGAGGCATTAGCTAAACTTAAAGTTCCAGCTTGGGATATCTTAGAAGCTACTCCATTTGCCCTTGATGCAGC TCTCACTGCTTGTGGCCATGGAAGGCTTTCTCCCCGTGACCTTGCTACAGGCCTTAAAGATCTTGCTGATTTTCTACCGGCAACTTTAGCCACTATAGCG AGCTACTTTGCTGCGGAAGTTACAAGGGGTATTTGGAAGCCTGCTTGTATGAATGGAAGTGATTGGCCAAGCCCTGCTGCCAATCTGGCCTTCGTGGAAC AGCAAATAAAGAAGATATTAGCAGCTACCGGAGTTAATGTGCCAAGCCTTACTGTAGCGGGGACCTCTCCGGACACACTTCCTTTACCGTTAGCCGCACT AGTAAGCCTCACAATCACTTACAAACTAGACCAAACATCCGACCGCTTCCTAACTATTGTCGGTCCCGCCTTGACTGCCCTCGGCGCCGGTTGCCCATGG CCGTGCATGCCCATCATAGCCTCTCTATGGGTCCAGAAAGCTAAACGCTGGAGCGACTTCCTCGTTTTCCACGCTTCCCAAACCGTCTTCCACCACAACA GTGACGCCGTAGTTCAACTCTTAAAGAGCTGCTTCGCATCCACGCTAGGGCTCACTCCTCTCTACATTTCGAGCAGCAGTGGCGTCGGTTGCCTTCTCGG CCACGGTTTTGGGTCCCACTATTCAGGCGGGATAAAACCGGTCGCCCCGGGGATTCTTTACCTGAAAGTTCATCGAGCAATCCGGGACGTCATGTTCATG ACCGAAGAAATTGTCTCTCTCCTCATGCACTCGGTTCGAGAAATTGCCGGCAGCGGCTTACCTAGAGACGCCACAGAGAAATTAAGAAAGACCAAGCACG GGATGAGATACGGGCAGCTTTCGATAGCCAAAGCAATGAGACGGGTGAAACTTGCAGCCACGCTCGGGGCTTCATTAGTGTGGATTTCGGGCGGTCTGAA TCTGGTTCAGTCCCTGATCAAAGAAACCTTACCGTCATGGTTCATATCGGAACACAGCTCCGACCAGCTATCCAGCGACGAATCCGGCGGCGACTTGGTC GCTACGTTGGGAGGGTATGCTCTGGCGTACTTTGCGGTGCTGTGCGGGACATTCGCATGGGGTATCGACTTGGCATCTCCGGCGTCAAGACGGCGTTCGA AAGTTCTGACGGCCCATTTGGAGTTTTTGGCGAGTGCCTTGGATGGCAAGGTATCGCTGGGCTGTGACTGGAAGACGGCACAGGCTTACGTCACCGGATT TATAGGGCTAATGGTGGCTTGTACGCCGAAGTGGGTGGAGGAGGTGAACGTGGATCTGCTGAAGAGGCTGAGTAAGCGGTTGAGGCAAGGGAACGATAGG GAGCTCGCTCTGTCGTTGCTGGGGTGTGGAGGAATCGGGTCGATGGGTGCTGCTGCTGAGCTAGTCGTGGAATGTGGATTGTTTAACTAG
AA sequence Show only first row Show all	>Lus10000663 pacid=23157551 polypeptide=Lus10000663 locus=Lus10000663.g ID=Lus10000663.BGIv1.0 annot-version=v1.0 MMAAVSVQPLPQILWDSVLQFTKSAQQKNTDPLQWAIQLSSSLASAGVALPSADIADLLVSHICFENHVPIAWKLLEKALSVKIVPPMLVLALLSTRAIP NRRLHPTAYRLYMELVRRHAFAFSSEISGPNSAKMMKFIDDVLHLSDVFQLEATEPGVFLVQFLFSVVWQLVDASLDDEGLLELTLEKKSRWLQAAEDME IDGFADKRSEHNEGVVKGNTIMAIELIGEFLRTRFTSRILYLAFANMPSHWGSFSQGMQTLVANSVALRSSKLLSPENLEQLLSKTTVPFHRFFKTKLQL ECHASISSTSIESSAGQWHGMSQSELWLPIDLFLEECMDGSQLAVVSAIENLVGLVKSLRAINGCKWQDTFLGLWAAALRLVQRERDPREGPDPRLDTCL CLLLSVTTITVAEIIEEEESELVDVTPCYPGIQKKENQGPVTCREGLVSALQILGDYEGLLTPPQSVAPLANQAAAKATVFISGLATNNGYYENVSLNDI PIDCSGNLRHLIVEACISRNVLDTSAYLWPGYVGACTSQVPSQMPCWSSLMKGSALTPAMMSTLVATPASCLSEIEKIYEIAVNGSNDEKISAAIILCGA SLLRGWNVQDHTILFIIKLLSPPVPEDSTRSQSHLIDYAPLLYVLLLGMSPVDCVQILSLHGLAPLLAGALMPICEVFGSIAPDTTWTLPTGEEVSCHAL FSCAFSLLVRLWRFHFPPSDQVMGDVTSVGSQLSPDYLLMVRNSRLAAFGTSPRDQIRLKRFSQKLILSRDPIFMDSFPKLKIWYRHHLECMSCAFSGLV PGTPVHQIVEALLKIMFRKINRNSQPVTATSSGSSNSSGPAAEEALAKLKVPAWDILEATPFALDAALTACGHGRLSPRDLATGLKDLADFLPATLATIA SYFAAEVTRGIWKPACMNGSDWPSPAANLAFVEQQIKKILAATGVNVPSLTVAGTSPDTLPLPLAALVSLTITYKLDQTSDRFLTIVGPALTALGAGCPW PCMPIIASLWVQKAKRWSDFLVFHASQTVFHHNSDAVVQLLKSCFASTLGLTPLYISSSSGVGCLLGHGFGSHYSGGIKPVAPGILYLKVHRAIRDVMFM TEEIVSLLMHSVREIAGSGLPRDATEKLRKTKHGMRYGQLSIAKAMRRVKLAATLGASLVWISGGLNLVQSLIKETLPSWFISEHSSDQLSSDESGGDLV ATLGGYALAYFAVLCGTFAWGIDLASPASRRRSKVLTAHLEFLASALDGKVSLGCDWKTAQAYVTGFIGLMVACTPKWVEEVNVDLLKRLSKRLRQGNDR ELALSLLGCGGIGSMGAAAELVVECGLFN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G48110		MED33B, REF4	reduced epidermal fluorescence...		Lus10000663 [exp]	0	1
AT5G51070		SAG15, CLPD, ER...	SENESCENCE ASSOCIATED GENE 15,...		Lus10032514 [exp]	3.5	0.8669
AT1G78420			RING/U-box superfamily protein...		Lus10005577 [exp]	4.2	0.8890
AT2G31260		ATAPG9, APG9	autophagy 9 (APG9) (.1)		Lus10033881 [exp]	8.1	0.9093
AT1G10290		DRP2A, ADL6	DYNAMIN-RELATED PROTEIN 2A, dy...		Lus10024461 [exp]	14.6	0.8290
AT5G07270		XBAT33	XB3 ortholog 3 in Arabidopsis ...		Lus10005754 [exp]	15.6	0.8610
AT5G51070		SAG15, CLPD, ER...	SENESCENCE ASSOCIATED GENE 15,...		Lus10043013 [exp]	16.7	0.8773
AT4G16144		AMSH3	associated molecule with the S...		Lus10036454 [exp]	30.0	0.8488
AT4G30790			unknown protein		Lus10005509 [exp]	36.8	0.8690
AT3G09560		ATPAH1	PHOSPHATIDIC ACID PHOSPHOHYDRO...		Lus10009064 [exp]	36.9	0.8403
AT1G73980			Phosphoribulokinase / Uridine ...		Lus10009040 [exp]	39.2	0.8028

Compare expression of checked genes

Lus10000663 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.