Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G23570 144 / 3e-40 alpha/beta-Hydrolases superfamily protein (.1) AT3G23600 138 / 4e-38 alpha/beta-Hydrolases superfamily protein (.1.2) AT2G27520 52 / 4e-07 F-box and associated interaction domains-containing protein (.1) AT3G61590 42 / 0.0006 HWS, HS HAWAIIAN SKIRT, Galactose oxidase/kelch repeat superfamily protein (.1.2) AT5G49610 42 / 0.0006 F-box family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10000667 [exp] 610 / 0 ND 51 / 4e-07 Lus10008162 [exp] 202 / 2e-63 AT1G60370 48 / 5e-07 F-box and associated interaction domains-containing protein (.1) Lus10027997 [exp] 196 / 3e-60 AT3G23600 267 / 1e-90 alpha/beta-Hydrolases superfamily protein (.1.2) Lus10000665 [exp] 194 / 7e-59 AT3G23600 194 / 2e-61 alpha/beta-Hydrolases superfamily protein (.1.2) Lus10000668 [exp] 194 / 7e-59 AT3G23600 194 / 2e-61 alpha/beta-Hydrolases superfamily protein (.1.2) Lus10013986 [exp] 181 / 7e-51 ND 55 / 7e-08 Lus10040838 [exp] 176 / 2e-49 AT3G23950 57 / 2e-08 F-box family protein (.1) Lus10013987 [exp] 179 / 5e-49 AT3G23950 59 / 1e-08 F-box family protein (.1) Lus10002769 [exp] 167 / 1e-48 AT1G15680 64 / 2e-11 F-box family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G201400 [exp] 144 / 2e-40 AT3G23600 352 / 3e-124 alpha/beta-Hydrolases superfamily protein (.1.2) Potri.007G112700 [exp] 133 / 3e-36 AT3G23600 276 / 2e-94 alpha/beta-Hydrolases superfamily protein (.1.2) Potri.011G004800 [exp] 91 / 1e-19 AT5G49610 65 / 3e-11 F-box family protein (.1) Potri.009G132400 [exp] 74 / 3e-14 ND / Potri.011G000700 [exp] 68 / 5e-12 AT3G15910 58 / 5e-09 unknown protein Potri.017G048100 [exp] 56 / 5e-09 AT3G23600 91 / 1e-22 alpha/beta-Hydrolases superfamily protein (.1.2) Potri.008G144000 [exp] 44 / 0.0001 AT4G38870 97 / 6e-22 F-box and associated interaction domains-containing protein (.1) Potri.013G067800 [exp] 44 / 0.0001 AT5G07610 131 / 4e-34 F-box family protein (.1) Potri.005G043500 [exp] 42 / 0.001 AT5G07610 135 / 7e-36 F-box family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0028 [flax] [poplar] AB_hydrolase PF01738 [flax] [poplar] DLH Dienelactone hydrolase family
Representative CDS sequence Show only first row Show all	>Lus10000664 pacid=23157548 polypeptide=Lus10000664 locus=Lus10000664.g ID=Lus10000664.BGIv1.0 annot-version=v1.0 ATGAAGCACGAACAAACTAGCTATGAAACACGAAATTTAAGGAAACTGGCAGATAAAGTTGCAGCGGCAGGATTCTATGTTGTAGTTCCAGACTTCTTCC ATGGAGATCCGTACATTCCTGACAGAACCGAAATTCCCATCTCTGTCTGGAGGGAATCCCACAGAACAGATAAAGGGTATGAAGATGCTAAACAAGTGAT TGCTGCACTGAGAAGCAGTACTGGCATCTCTGCAATTGGAGCTGCAGCTAAGGTGGTTGTGGAGGTAGCCAAGGACTCTGATCTCATTAAGGCTGCAGTC TTGCTACATCCTTCTCGAGTAACTGTCGAGGATGTCAAGGATGTGAAAGTGCCGATTGCAGTACTGGGAGCTGAGATAGACAAGCTTTCTCCACATGAAC TTCTCAAGCAGTTTGATTGTCTACTAAGCCAGAGGCTCCCGAACCCTAGCTCCTCCTGCCGCTGCAAAGCAGTCTGCAAGCAATGGGGTTCCGTCATTTC CGATCCCAGCTTCAATCGCCAGTTTATTGCTCATCACCGGAGTAAGTACCAACCACCAGCTCTGTTTCTCCCTGCACATGACCCGCAATCGATCCTCACC TTTCTCCCCGTTCCTGATCGAGCGAAATTGAGAGTGTTTGATTGCTTCAAGGACTTGCTTTTATGCGGGTATGATGAAGAATTTGGTGAATTGGAAAGAT CCTTCTTGATCTGCAATCCATTTACGAAGCAATGGATCGCCCTTCCTTTGTCGCCAAAACCCCCGAAACGAGAGTATACGGGATCTGAGGCACTGTTAGT TTGTCAACCCCGTAGTAATTATAATTATAATCTTGTAGGAGACGAAGCAGAATCATCTGCAGGCGGCTTTGTTTACTCGGAGTATCGTTTCCGTGTGGTG CGTCTCTTACAATGTGGCAAGAACCTGATTCTGGAGGTGTTTCGTTCCGATTCCGGGACATGGAGGAAGGTGGTTCGTAAGAATTCCGTAAAAAAGCCGT GGAGCAATGTAGTGTGCTGGAAGAAGCGGTTGTTTTGTATCAATTATGACGGCAATTCCGATAGCAGAATGCTTTTGTCATTTGATCCTTTCCGCCTTCT TATGCGCCCCAATGCTCTGCTTGTACATTTTTCATTGTGGGACAGATTGTGCGCAGGACGTGGGAATTTATCAATCTCGCAAGGTGATATGCACATTATA ATATTGGATGTTGAAGGTGTACGTGATGCTTCAAGGAATACCTTGAGTGTTTGGAGACTGGAAGTAGAAGATAATGTGTACAGCTGGAGCCAAAAATATG AATGGTGTTGA
AA sequence Show only first row Show all	>Lus10000664 pacid=23157548 polypeptide=Lus10000664 locus=Lus10000664.g ID=Lus10000664.BGIv1.0 annot-version=v1.0 MKHEQTSYETRNLRKLADKVAAAGFYVVVPDFFHGDPYIPDRTEIPISVWRESHRTDKGYEDAKQVIAALRSSTGISAIGAAAKVVVEVAKDSDLIKAAV LLHPSRVTVEDVKDVKVPIAVLGAEIDKLSPHELLKQFDCLLSQRLPNPSSSCRCKAVCKQWGSVISDPSFNRQFIAHHRSKYQPPALFLPAHDPQSILT FLPVPDRAKLRVFDCFKDLLLCGYDEEFGELERSFLICNPFTKQWIALPLSPKPPKREYTGSEALLVCQPRSNYNYNLVGDEAESSAGGFVYSEYRFRVV RLLQCGKNLILEVFRSDSGTWRKVVRKNSVKKPWSNVVCWKKRLFCINYDGNSDSRMLLSFDPFRLLMRPNALLVHFSLWDRLCAGRGNLSISQGDMHII ILDVEGVRDASRNTLSVWRLEVEDNVYSWSQKYEWC

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G23570			alpha/beta-Hydrolases superfam...		Lus10000664 [exp]	0	1
					Lus10000667 [exp]	1.0	0.9567
AT1G60590			Pectin lyase-like superfamily ...		Lus10029140 [exp]	71.1	0.6965
AT4G33360		FLDH	farnesol dehydrogenase, NAD(P)...		Lus10021740 [exp]	137.6	0.6809
					Lus10030060 [exp]	176.7	0.6686

Compare expression of checked genes

Lus10000664 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.