Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G23600 194 / 1e-61 alpha/beta-Hydrolases superfamily protein (.1.2) AT3G23570 183 / 3e-57 alpha/beta-Hydrolases superfamily protein (.1) AT1G35420 42 / 0.0002 alpha/beta-Hydrolases superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10000668 [exp] 545 / 0 AT3G23600 194 / 2e-61 alpha/beta-Hydrolases superfamily protein (.1.2) Lus10027997 [exp] 293 / 3e-100 AT3G23600 267 / 1e-90 alpha/beta-Hydrolases superfamily protein (.1.2) Lus10000664 [exp] 211 / 1e-65 AT3G23570 166 / 1e-48 alpha/beta-Hydrolases superfamily protein (.1) Lus10035767 [exp] 189 / 2e-59 AT3G23600 340 / 2e-119 alpha/beta-Hydrolases superfamily protein (.1.2) Lus10004436 [exp] 150 / 3e-44 AT3G23570 222 / 7e-73 alpha/beta-Hydrolases superfamily protein (.1) Lus10008159 [exp] 95 / 1e-22 ND / Lus10008157 [exp] 81 / 9e-18 ND 38 / 0.006 Lus10028040 [exp] 71 / 3e-14 AT3G19540 152 / 7e-43 Protein of unknown function (DUF620) (.1) Lus10028069 [exp] 66 / 4e-13 ND /
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G201400 [exp] 209 / 2e-67 AT3G23600 352 / 3e-124 alpha/beta-Hydrolases superfamily protein (.1.2) Potri.007G112700 [exp] 196 / 3e-62 AT3G23600 276 / 2e-94 alpha/beta-Hydrolases superfamily protein (.1.2) Potri.017G048100 [exp] 78 / 2e-17 AT3G23600 91 / 1e-22 alpha/beta-Hydrolases superfamily protein (.1.2) Potri.019G079000 [exp] 40 / 0.001 AT1G35420 332 / 4e-114 alpha/beta-Hydrolases superfamily protein (.1.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10000665 pacid=23157547 polypeptide=Lus10000665 locus=Lus10000665.g ID=Lus10000665.BGIv1.0 annot-version=v1.0 ATGAACCCAATTGGAGGGTGTTTCAGCCTAGAATCTCTTGCTGGCCTACTCCAATTCCAAGGTACTACGACTTTCGACGTATCTACCACGGAAGATTCGA TTGATGGGTTCAGAACGCTACTGCAGCAGCAGCAGCAGCAGCATCACACTCCAAGGGTTGCGTTCGGAAGAAGCAGAATGCAGTGGAAGGCAGCTTGTGC CCTAGGAGCCAAACAGATTCTCCAATTGGGTTATTCAAAAAAATTCCCTTCTTTTGCAGGGTATGAAACACCAAATCTAAAGAAACTGGGAGGCAAAGTT GCAGCAGCAGAATTCTATGTTGTAGTTCCTGACTTCTGCCATGGAGATCCGTACATACCTTACAGACCCGAAATTCCCATCTCTGTCTGGAGGGAATCCC ACGGAACAGATAAAGAGTATGAAGATGCTAAACAAGTGATTGCTGTACTGAGAAGCAGTACTGGCATCTCTGCAGTTGGAGCTTCAGCTAAGGTGGTTGT GGAACTTGCTAAGGATTCTGATCTCATTAAAGCCTCAGTCTTGCTACATCCTTCTTGTGTCACTGTCGAGGGCATCAAAGATGGGAAGGTGCCGATTGCA GTACTGGGAGCTGAGATATACAAGCTTTCTCCACATGAACTTCTCAAGCAGTTTGATTGTCTACTAAGCCAGAGGTACAGATATGTGAAGATATTTGGAG GGGTTGCTCATGGATGGACTGTTAGGTACAAAGATGAAGATGAAGCTGCAGTCAAGAGTGCTGAGAAGTCTCATCAGGACATGCTTGATTGGTTCACCAA ATTTGTCAAGTGA
AA sequence Show only first row Show all	>Lus10000665 pacid=23157547 polypeptide=Lus10000665 locus=Lus10000665.g ID=Lus10000665.BGIv1.0 annot-version=v1.0 MNPIGGCFSLESLAGLLQFQGTTTFDVSTTEDSIDGFRTLLQQQQQQHHTPRVAFGRSRMQWKAACALGAKQILQLGYSKKFPSFAGYETPNLKKLGGKV AAAEFYVVVPDFCHGDPYIPYRPEIPISVWRESHGTDKEYEDAKQVIAVLRSSTGISAVGASAKVVVELAKDSDLIKASVLLHPSCVTVEGIKDGKVPIA VLGAEIYKLSPHELLKQFDCLLSQRYRYVKIFGGVAHGWTVRYKDEDEAAVKSAEKSHQDMLDWFTKFVK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G23600			alpha/beta-Hydrolases superfam...		Lus10000665 [exp]	0	1
AT3G23600			alpha/beta-Hydrolases superfam...		Lus10000668 [exp]	1.0	0.9724
AT2G37500			arginine biosynthesis protein ...		Lus10023756 [exp]	8.1	0.6589
AT2G34750			RNA polymerase I specific tran...		Lus10005701 [exp]	17.3	0.7363
AT5G42820	C3HZnF	ATU2AF35B	Zinc finger C-x8-C-x5-C-x3-H t...		Lus10008648 [exp]	19.4	0.6959
AT2G41430		LSR1, CID1, ERD...	CTC-Interacting Domain 1, dehy...		Lus10035419 [exp]	26.0	0.7100
AT4G39260		ATGRP8, CCR1, G...	glycine-rich RNA-binding prote...		Lus10026343 [exp]	26.9	0.6609
AT5G43470		HRT, RCY1, RPP8	RECOGNITION OF PERONOSPORA PAR...		Lus10025625 [exp]	36.5	0.6864
AT2G44050		COS1	coronatine insensitive1 suppre...		Lus10000192 [exp]	38.4	0.5862
					Lus10035514 [exp]	49.5	0.6204
AT2G36305		RCE1, ATFACE2, ...	RAS-CONVERTING ENZYME 1, ARABI...		Lus10014190 [exp]	55.5	0.6534

Compare expression of checked genes

Lus10000665 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.