Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G32440 831 / 0 PKP3 plastidial pyruvate kinase 3 (.1) AT5G52920 772 / 0 PKP-BETA1, PKP2, PKP1 PLASTIDIAL PYRUVATE KINASE 2, PLASTIDIAL PYRUVATE KINASE 1, plastidic pyruvate kinase beta subunit 1 (.1) AT3G22960 377 / 7e-124 PKP-ALPHA, PKP1 PLASTIDIAL PYRUVATE KINASE 1, Pyruvate kinase family protein (.1) AT5G63680 293 / 1e-92 Pyruvate kinase family protein (.1) AT5G08570 291 / 1e-91 Pyruvate kinase family protein (.1) AT5G56350 278 / 4e-87 Pyruvate kinase family protein (.1) AT3G25960 274 / 2e-85 Pyruvate kinase family protein (.1) AT3G55650 274 / 3e-85 Pyruvate kinase family protein (.1) AT3G04050 271 / 3e-84 Pyruvate kinase family protein (.1) AT4G26390 270 / 6e-84 Pyruvate kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011057 [exp] 1160 / 0 AT1G32440 827 / 0.0 plastidial pyruvate kinase 3 (.1) Lus10039316 [exp] 743 / 0 AT5G52920 902 / 0.0 PLASTIDIAL PYRUVATE KINASE 2, PLASTIDIAL PYRUVATE KINASE 1, plastidic pyruvate kinase beta subunit 1 (.1) Lus10039396 [exp] 382 / 5e-126 AT3G22960 934 / 0.0 PLASTIDIAL PYRUVATE KINASE 1, Pyruvate kinase family protein (.1) Lus10006633 [exp] 377 / 5e-124 AT3G22960 920 / 0.0 PLASTIDIAL PYRUVATE KINASE 1, Pyruvate kinase family protein (.1) Lus10012446 [exp] 328 / 3e-105 AT3G22960 616 / 0.0 PLASTIDIAL PYRUVATE KINASE 1, Pyruvate kinase family protein (.1) Lus10033756 [exp] 312 / 5e-99 AT3G22960 599 / 0.0 PLASTIDIAL PYRUVATE KINASE 1, Pyruvate kinase family protein (.1) Lus10017364 [exp] 292 / 3e-92 AT5G08570 907 / 0.0 Pyruvate kinase family protein (.1) Lus10041003 [exp] 287 / 4e-90 AT5G08570 928 / 0.0 Pyruvate kinase family protein (.1) Lus10010329 [exp] 280 / 2e-87 AT5G56350 930 / 0.0 Pyruvate kinase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G145300 [exp] 891 / 0 AT1G32440 846 / 0.0 plastidial pyruvate kinase 3 (.1) Potri.003G088700 [exp] 884 / 0 AT1G32440 836 / 0.0 plastidial pyruvate kinase 3 (.1) Potri.012G034000 [exp] 797 / 0 AT5G52920 970 / 0.0 PLASTIDIAL PYRUVATE KINASE 2, PLASTIDIAL PYRUVATE KINASE 1, plastidic pyruvate kinase beta subunit 1 (.1) Potri.010G080700 [exp] 381 / 1e-125 AT3G22960 930 / 0.0 PLASTIDIAL PYRUVATE KINASE 1, Pyruvate kinase family protein (.1) Potri.008G159700 [exp] 380 / 3e-125 AT3G22960 945 / 0.0 PLASTIDIAL PYRUVATE KINASE 1, Pyruvate kinase family protein (.1) Potri.001G289300 [exp] 333 / 2e-107 AT3G22960 623 / 0.0 PLASTIDIAL PYRUVATE KINASE 1, Pyruvate kinase family protein (.1) Potri.009G084700 [exp] 327 / 8e-105 AT3G22960 620 / 0.0 PLASTIDIAL PYRUVATE KINASE 1, Pyruvate kinase family protein (.1) Potri.013G060400 [exp] 286 / 5e-90 AT5G56350 835 / 0.0 Pyruvate kinase family protein (.1) Potri.019G032600 [exp] 284 / 4e-89 AT5G56350 816 / 0.0 Pyruvate kinase family protein (.1) Potri.010G254900 [exp] 280 / 2e-87 AT5G08570 927 / 0.0 Pyruvate kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0151 [flax] [poplar] PK_TIM PF00224 [flax] [poplar] PK Pyruvate kinase, barrel domain CL0151 [flax] [poplar] PF02887 [flax] [poplar] PK_C Pyruvate kinase, alpha/beta domain
Representative CDS sequence Show only first row Show all	>Lus10000672 pacid=23144027 polypeptide=Lus10000672 locus=Lus10000672.g ID=Lus10000672.BGIv1.0 annot-version=v1.0 ATGGCGGCAATGAACAACCAAATGATCTCCAATAGGCTGTCCGCGGCGGGGGCGGGGGCGGATCACTCGCGGCTGTTATCGAAGAGCTTCGTCGGATGCG ACCAATCCGCGAGGAGATTTGCATCTCCCCGGTCTGGATTTAAGCTCTCCGTATCAATGAAGCTCTCCGCCGAGTCGTCTCCGGAGGTTACTCCTGTTAC GGCTAACGGCCCTGTATCTGCTGACAAGGAGTATGTGACTCCGGACAGTGTAGCTGTCAATAATATTATGGGGTATGAGAAGACGAGACCGATTGCTCTA AGGAAAACGAAGATAGTTTGTACGATTGGTCCATCAACGAGCTCGCGAGAAATGATATGGAAGCTTGCAGAAGCTGGGATGAATGTGGCTCGTTTGAACA TGTCGCATGGAGACCATGCCTCTCACCAGAAGACTATTGACTTGGTTAAAGAGTATAATGCACAGTTTAAAGACAAAGTTATTGCTATCATGCTGGACAC CAAGGGTCCGGAGGTTAGAAGTGGAGACGTGCCTCAACCAATCTATCTCCAGGAGGGGCAGGAATTTAATTTTACAATCAAAAGAGGAGTCTCAACAGAA GACACTGTGAGTGTGAATTATGATGACTTCATCAATGATGTTGAGGCGGGAGATGAATTGCTTGTGGATGGTGGAATGATGTCCTTGGTTGTGAAGTCAA AGACGACCGAGACAGTTAAATGTGAAGTAGTTGATGGTGGTGAACTAAAATCACGACGTCATTTGAATGTTCGTGGTAAAAGTGCAACTCTTCCTTCTAT TACAGACAAGGACTGGGAAGATATCAAATTCGGTGTGGACAACCAAGTTGATTTTTATGCTGTCTCGTTTGTTAAAGATGCTAACGTGATCCATGAGTTG AAAGCTTATCTCAAGAGCTGCAATGCTGACATTCATGTTATTCCAAAAATTGAAAGTGCTGACTCCATCCCAAATCTTCAGTCAATACTGTCTGCTTCAG ATGGGGCAATGGTTGCTCGTGGAGACCTTGGAGCTGAACTTCCAATTGAAGAAGTTCCTTTGTTGCAGAATGACATCATCAGAAGGTGTCACAGCATGCA GAAGCCAGTTATCGTGGCAACAAACATGCTCGAAAGCATGATCAATCATCCTACCCCAACAAGGGCTGAGGTATCTGATATTGCAATTGCTGTTCGTGAA GGAGCTGATGCAGTCATGCTTTCGGGTGAAACTGCTCATGGGAAATTCCCATTGAAAGCTGTTAAAGTTATGCATACCGTAGCGCTGAGGACAGAAGCAA GTTTACCTGCTAACACTGCTCCTCCGACTGGTGCACACAAGAGCCATATGGGTGATATGTTTGCCTTTCATGCTACAATCATGGCAAACACTCTCAACAC ACCGATCATCGTCTTCACAAAAACTGGATCAATGGCAGTGCTTTTGAGTCATTATCGCCCTTCCTCCACCATCTTCGCCTTCACAGATGATGAAAGGATA AAGCAGAGGCTGGTGCTATACCAGGGAGTCATGCCGATTTACATGAAGTTCACCAACGATGCAGAAGAGACCTTCTCCCGAGCCGTCAAGCTCTTAGTGG ACAAGGGTCTGTTGGTGGAAGGACAGCACGTCACTCTCGTCCAGAGCGGAGCTCAACCAATCTGGCGTATCGAGTCTACTCACCACATCCAAGTTCGGAA GGTTCAAAGTTGA
AA sequence Show only first row Show all	>Lus10000672 pacid=23144027 polypeptide=Lus10000672 locus=Lus10000672.g ID=Lus10000672.BGIv1.0 annot-version=v1.0 MAAMNNQMISNRLSAAGAGADHSRLLSKSFVGCDQSARRFASPRSGFKLSVSMKLSAESSPEVTPVTANGPVSADKEYVTPDSVAVNNIMGYEKTRPIAL RKTKIVCTIGPSTSSREMIWKLAEAGMNVARLNMSHGDHASHQKTIDLVKEYNAQFKDKVIAIMLDTKGPEVRSGDVPQPIYLQEGQEFNFTIKRGVSTE DTVSVNYDDFINDVEAGDELLVDGGMMSLVVKSKTTETVKCEVVDGGELKSRRHLNVRGKSATLPSITDKDWEDIKFGVDNQVDFYAVSFVKDANVIHEL KAYLKSCNADIHVIPKIESADSIPNLQSILSASDGAMVARGDLGAELPIEEVPLLQNDIIRRCHSMQKPVIVATNMLESMINHPTPTRAEVSDIAIAVRE GADAVMLSGETAHGKFPLKAVKVMHTVALRTEASLPANTAPPTGAHKSHMGDMFAFHATIMANTLNTPIIVFTKTGSMAVLLSHYRPSSTIFAFTDDERI KQRLVLYQGVMPIYMKFTNDAEETFSRAVKLLVDKGLLVEGQHVTLVQSGAQPIWRIESTHHIQVRKVQS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G32440		PKP3	plastidial pyruvate kinase 3 (...		Lus10000672 [exp]	0	1
AT3G60870	AT-hook	AHL18	AT-hook motif nuclear-localize...		Lus10009301 [exp]	1.7	0.9752
AT1G49600		ATRBP47A	RNA-binding protein 47A (.1)		Lus10027911 [exp]	1.7	0.9633
AT1G72890			Disease resistance protein (TI...		Lus10042020 [exp]	3.2	0.9668
AT1G31690			Copper amine oxidase family pr...		Lus10013356 [exp]	3.5	0.9632
AT5G52640		AtHsp90-1, ATHS...	HEAT SHOCK PROTEIN 83, HEAT SH...		Lus10038845 [exp]	3.7	0.9581
AT1G32440		PKP3	plastidial pyruvate kinase 3 (...		Lus10011057 [exp]	4.5	0.9558
AT1G01470		LSR3, LEA14	LIGHT STRESS-REGULATED 3, LATE...		Lus10001869 [exp]	5.0	0.9607
AT5G06250	B3		AP2/B3-like transcriptional fa...		Lus10021326 [exp]	6.0	0.9560
AT5G13110		G6PD2	glucose-6-phosphate dehydrogen...		Lus10003134 [exp]	6.0	0.9585
AT4G26910			Dihydrolipoamide succinyltrans...		Lus10032633 [exp]	6.0	0.9548

Compare expression of checked genes

Lus10000672 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.