Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G32450 823 / 0 NRT1.5 nitrate transporter 1.5 (.1) AT4G21680 728 / 0 NRT1.8 NITRATE TRANSPORTER 1.8 (.1) AT5G19640 595 / 0 Major facilitator superfamily protein (.1) AT3G54140 447 / 6e-151 ATPTR1 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 1, peptide transporter 1 (.1) AT2G02040 437 / 1e-146 NTR1, ATPTR2-B NITRATE TRANSPORTER 1, ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 2, peptide transporter 2 (.1) AT1G62200 426 / 2e-142 AtPTR6 peptide transporter 6, Major facilitator superfamily protein (.1) AT5G01180 411 / 8e-137 ATPTR5 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 5, peptide transporter 5 (.1) AT2G02020 371 / 1e-121 AtPTR4 peptide transporter 4, Major facilitator superfamily protein (.1.2) AT2G26690 334 / 6e-107 Major facilitator superfamily protein (.1) AT5G46050 330 / 3e-105 ATPTR3, PTR3 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 3, peptide transporter 3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011058 [exp] 1051 / 0 AT1G32450 926 / 0.0 nitrate transporter 1.5 (.1) Lus10030945 [exp] 900 / 0 AT1G32450 920 / 0.0 nitrate transporter 1.5 (.1) Lus10040102 [exp] 894 / 0 AT1G32450 910 / 0.0 nitrate transporter 1.5 (.1) Lus10013736 [exp] 583 / 0 AT5G19640 728 / 0.0 Major facilitator superfamily protein (.1) Lus10039204 [exp] 576 / 0 AT5G19640 727 / 0.0 Major facilitator superfamily protein (.1) Lus10030287 [exp] 477 / 4e-162 AT1G32450 542 / 0.0 nitrate transporter 1.5 (.1) Lus10040099 [exp] 453 / 5e-153 AT2G02040 883 / 0.0 NITRATE TRANSPORTER 1, ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 2, peptide transporter 2 (.1) Lus10030947 [exp] 452 / 1e-152 AT2G02040 884 / 0.0 NITRATE TRANSPORTER 1, ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 2, peptide transporter 2 (.1) Lus10011055 [exp] 445 / 7e-150 AT2G02040 847 / 0.0 NITRATE TRANSPORTER 1, ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 2, peptide transporter 2 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G145200 [exp] 890 / 0 AT1G32450 949 / 0.0 nitrate transporter 1.5 (.1) Potri.003G088800 [exp] 882 / 0 AT1G32450 979 / 0.0 nitrate transporter 1.5 (.1) Potri.014G179400 [exp] 794 / 0 AT1G32450 791 / 0.0 nitrate transporter 1.5 (.1) Potri.003G212900 [exp] 622 / 0 AT5G19640 750 / 0.0 Major facilitator superfamily protein (.1) Potri.001G013400 [exp] 622 / 0 AT5G19640 754 / 0.0 Major facilitator superfamily protein (.1) Potri.010G100200 [exp] 458 / 5e-155 AT2G02040 897 / 0.0 NITRATE TRANSPORTER 1, ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 2, peptide transporter 2 (.1) Potri.016G111800 [exp] 433 / 2e-145 AT3G54140 893 / 0.0 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 1, peptide transporter 1 (.1) Potri.001G248600 [exp] 429 / 8e-144 AT3G54140 834 / 0.0 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 1, peptide transporter 1 (.1) Potri.006G096800 [exp] 425 / 2e-142 AT3G54140 896 / 0.0 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 1, peptide transporter 1 (.1) Potri.009G042400 [exp] 424 / 5e-142 AT3G54140 832 / 0.0 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 1, peptide transporter 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0015 [flax] [poplar] MFS PF00854 [flax] [poplar] PTR2 POT family
Representative CDS sequence Show only first row Show all	>Lus10000673 pacid=23144029 polypeptide=Lus10000673 locus=Lus10000673.g ID=Lus10000673.BGIv1.0 annot-version=v1.0 ATGGCTAGTTGCATGAGGGTCCTTTGCAATAGCAACCAGGAGAAAAAGGTTTCAGAAAGGGAGAAGGAAGGAGAGTACTGTAATGGTGATGCAACTACGA CTACAATGGACGGAACAGTCGATTGGAAAGGGAAGCTAGCAATTCGATCGAAATCGGGGCAATGGACTGCCGGAATCATCATCCTTCTGAACCAAGGTCT AGCAACCTTAGCATTCTTTGGAGTTGGAGTGAACTTGGTGCTATTCTTAACCAGAGTTCTGCAGCAAGACAATGCAGAAGCAGCCAACAATGTCAGTAAA TGGACTGGAACTGTCTACATCTTCTCCCTAGTTGGTGCCTTCCTCAGTGACTCCTACTGGGGTAGATACAAGACTTGTGCCATCTTCCAAGGCATCTTCG TCCTGGGTTTGGTGCTACTGTCACTATCATCATACCTCTTCTTGATCAGACCAAAAGGCTGCGGAGACACTCTAACACCATGCGGCACACACACCAATGT AGAAGTCGCTCTGTTCTACCTCTCGATCTACCTAATCGCGCTAGGGAACGGAGGGTACCAGCCGAACATCGCCACGTTCGGAGCAGACCAGTTCGACGAG GAGGATGCGGTTGAAGGGCACTCGAAAGTCGCCTTCTTTAGCTACTTCTACTTGGCTCTAAACCTCGGCTCGCTCTTTTCCAACACTATACTCGGTTATT TCGAGGACGAAGGGATGTGGGCGCTCGGGTTCTGGGCGTCGGCTGGCTCAGCGTTTGCGGGATTAGTACTTTTTCTCGCCGGTTCGAGTAGGTATCGACA CTTTAAGCCTACGGGGAACCCCCTGGCACGACTTTGCCAGGTGGTTGTCGCATCGGTGAAGAAATGCAGGCTAAAGTCGGAGGAGAAGGCGGATGAATTG TTCGACATCGATTCGAAAGACTGCGCCGGAAGTGGGAATAGGAAGATCATGCATACTGATGGATTCAAGTTTCTTGACAGAGCAGCATGCATTACAACAA GGGACATGGACGATCAGAAGAACGGGTTTCGAAACCCGTGGCGATTATGCCCCGTTACGCAAGTTGAGGAAGTGAAATGCATACTCCGACTCCTCCCAAT ATGGCTCTGCACCATACTCTACTCGGTCGTGTTCACCCAGATGGCCTCACTCTTCGTCGAGCAAGGCGCCGCGATGAAAACCACGATATCAGGATTCCGA ATCCCACCGGCTAGCATGTCGAGCTTCGACATCCTAAGCGTCGCGCTCTTCATCTTCCTCTACAGGCGAGTCCTTGACCCGTTGGTCGGTCGAATCAAGA AATCGAGCACGAAAGGTTTCACGGAGCTCCAGAGGATGGGGATTGGTCTAGTGATCGCAGTACTGGCGATGGTCTCCGCAGGTATCGTGGAGTCGTACCG GTTGAGGCACGCTGACAAGGAATGCTCGAGCTGCGAGGGTTCGAGCTCGTTGAGCATAATGTGGCAAATACCGCAATACGCGCTGATAGGAGCCTCCGAG GTGTTCATGTACGTCGGCCAGCTGGAGTTCTTCAACGCCCAGGCACCCGACGGGTTGAAGAGCTTCGGATCGGCGCTCTGCATGACCTCGATCTCGTTGG GAAATTACGTGAGTAGCCTTCTGGTGACGATGGTGATGAAGATCTCGACGGAGGATCGGATGCCAGGGTGGATCCCGGGGAATCTGAACAAAGGTCACCT GGACAGATTCTACTTCTTGCTGGCTGCATTGACTTCGCTTGACTTGCTTGTGTATGTGGCATGTGCTAAGTGGTACAAGGGGATCGAGCATGAACGGAAG TCCGACGATAACTCCGAAGACGAGAGCGAGGGAGACGAGAAATGTGAAGTATAG
AA sequence Show only first row Show all	>Lus10000673 pacid=23144029 polypeptide=Lus10000673 locus=Lus10000673.g ID=Lus10000673.BGIv1.0 annot-version=v1.0 MASCMRVLCNSNQEKKVSEREKEGEYCNGDATTTTMDGTVDWKGKLAIRSKSGQWTAGIIILLNQGLATLAFFGVGVNLVLFLTRVLQQDNAEAANNVSK WTGTVYIFSLVGAFLSDSYWGRYKTCAIFQGIFVLGLVLLSLSSYLFLIRPKGCGDTLTPCGTHTNVEVALFYLSIYLIALGNGGYQPNIATFGADQFDE EDAVEGHSKVAFFSYFYLALNLGSLFSNTILGYFEDEGMWALGFWASAGSAFAGLVLFLAGSSRYRHFKPTGNPLARLCQVVVASVKKCRLKSEEKADEL FDIDSKDCAGSGNRKIMHTDGFKFLDRAACITTRDMDDQKNGFRNPWRLCPVTQVEEVKCILRLLPIWLCTILYSVVFTQMASLFVEQGAAMKTTISGFR IPPASMSSFDILSVALFIFLYRRVLDPLVGRIKKSSTKGFTELQRMGIGLVIAVLAMVSAGIVESYRLRHADKECSSCEGSSSLSIMWQIPQYALIGASE VFMYVGQLEFFNAQAPDGLKSFGSALCMTSISLGNYVSSLLVTMVMKISTEDRMPGWIPGNLNKGHLDRFYFLLAALTSLDLLVYVACAKWYKGIEHERK SDDNSEDESEGDEKCEV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G32450		NRT1.5	nitrate transporter 1.5 (.1)		Lus10000673 [exp]	0	1
AT5G18260			RING/U-box superfamily protein...		Lus10035820 [exp]	2.8	0.6721
AT3G62040			Haloacid dehalogenase-like hyd...		Lus10009256 [exp]	5.5	0.6953
AT3G62040			Haloacid dehalogenase-like hyd...		Lus10038016 [exp]	10.5	0.6505
AT4G23990		ATCSLG3	ARABIDOPSIS THALIANA CELLULOSE...		Lus10003196 [exp]	29.9	0.6653
AT5G10530			Concanavalin A-like lectin pro...		Lus10014648 [exp]	35.0	0.6174
AT3G14880			unknown protein		Lus10026217 [exp]	39.0	0.5996
AT3G21360			2-oxoglutarate (2OG) and Fe(II...		Lus10038283 [exp]	45.4	0.6281
AT3G54420		ATCHITIV, CHIV,...	CHITINASE CLASS IV, homolog of...		Lus10010866 [exp]	49.2	0.6150
AT2G45830		DTA2	downstream target of AGL15 2 (...		Lus10037864 [exp]	52.3	0.5847
AT2G28630		KCS12	3-ketoacyl-CoA synthase 12 (.1...		Lus10002190 [exp]	70.6	0.4605

Compare expression of checked genes

Lus10000673 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.