Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G32200 547 / 0 ACT1, ATS1 ACYLTRANSFERASE 1, phospholipid/glycerol acyltransferase family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011062 [exp] 926 / 0 AT1G32200 548 / 0.0 ACYLTRANSFERASE 1, phospholipid/glycerol acyltransferase family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G136600 [exp] 618 / 0 AT1G32200 587 / 0.0 ACYLTRANSFERASE 1, phospholipid/glycerol acyltransferase family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0228 [flax] [poplar] Acyltransferase PF01553 [flax] [poplar] Acyltransferase Acyltransferase
Representative CDS sequence Show only first row Show all	>Lus10000675 pacid=23144023 polypeptide=Lus10000675 locus=Lus10000675.g ID=Lus10000675.BGIv1.0 annot-version=v1.0 ATGATATTCTCCACTTCAGCTCCTCCTTCGACATTCCTCTCAACAGCCGCCGAAACAGCGCCGCCTCCGTCGCCGTTCTTCAGCATATCCTCCCTTCTTC CGGCGCGCTTCATTTCTCATGCTCCTTCTCCTCCTTCTTCGTCCCGTCTTGTGAGATCTGCTCATCCGCGGAGACTCGTTTTCGCTTCTCAGAATGTGAA CGCCATGGCCGAGCTCGTTAGCAGCAGCGACAAGAACCGAGCTCTTGCTGAACAGGAGGATCGGAGCGAAGGTCAGCTGGCCCACCGGTCGAGCACGTTT CTCGATGCTAAGACTGAAGAAGATATCTTGTCTGGAATCAGGAAGGAGGCAGAGGCAGGAAGGCTGCCTTCTGTTGTCGCAGCAGGGATGGAAGAGCTGT ACCACAATTACAAAAATGCTGTTCTTCAGAGTGGGTATCCAGATGCAGCTGAGATTGTACTGTCCAACATGTCTATGGTGTTGGACCGAGTTTTCGTCGA CGTGGAGGATCCTTTTCTCTTTTCACCTTATCACAAAGCACTGAGGGAGCCATTTGACTACTATGAATTTGGCCAAAAGTATATCCGTCCCTTAATTGAT TTTAGAAACTCTTATGTTGGAAACGTGAGCATTTTCAGTAAAATTGAAGAAAAGCTTCAGCAGGGTCATAATGTAATCTTGATGTCAAATCACCAGACCG AAGCAGATCCAGCAGTCATTGCTTTACTCCTTGAAACAACAAATCGTCATATTGCTGAGAACTTGATCTATGTAGCAGGGGATAGGGTGGTAACAGATCC TCTTTGCAAGCCTTTCAGCATGGGAAGGAATCTCTTCTGTGTCTACTCGAAAAAGCACATGCTTGATGTCCCGGAACTTGTTGAGATGAAGAAAAAGGCA AATATAAGGAGTTTGAAGGAAATGGCCATGCTTCTAAGGAACGGGTCACAGATAGTATGGATTGCACCAAGTGGCGGTAGGGATCGTCCTGATCCTGTGA CTGGAGAATGGCATCCAGCACGGTTTGACACATCTGCTGTTGACAATATGAGAAGGCTGGCTGAGAATTCCGGTGCTCCAGGACACATCTATCCGCTAGC TCTGTTGTGCTCTGATATCATGCCGCCTCCTCCCAAGGTGGAGAAAGAAATCGGAGAGAAACGGGTGATTGCCTATTCTGGAACTGGACTATCTATTGGG AAAGAAATAAAGTTCAACGAGTTTGCTAGTGCCTATGAGAATTCTGAACAGGCCAAGGAGGCATACGCAAAGGCCCTGTACAACTCCATTTCGGACCAGT ACGACGTGCTAAAATCTGCTATATGCGGGAAGCAAGTAGCGGATGCATCATCCCCGACAGTCTCTTTGTCCCAACCATGCGATAGGAAAGCTAGGAACAC CCGGACCGAAAACTCTAGGAAAAGGCAGGACACAATCGAGCATCAAGTTCCCTCTCTGGCGATACCAAGTTTCGTCACAGCACAAATTCTCAATCTGTTT CCGTGGTTCTCTGCTGTGTACAGGTAA
AA sequence Show only first row Show all	>Lus10000675 pacid=23144023 polypeptide=Lus10000675 locus=Lus10000675.g ID=Lus10000675.BGIv1.0 annot-version=v1.0 MIFSTSAPPSTFLSTAAETAPPPSPFFSISSLLPARFISHAPSPPSSSRLVRSAHPRRLVFASQNVNAMAELVSSSDKNRALAEQEDRSEGQLAHRSSTF LDAKTEEDILSGIRKEAEAGRLPSVVAAGMEELYHNYKNAVLQSGYPDAAEIVLSNMSMVLDRVFVDVEDPFLFSPYHKALREPFDYYEFGQKYIRPLID FRNSYVGNVSIFSKIEEKLQQGHNVILMSNHQTEADPAVIALLLETTNRHIAENLIYVAGDRVVTDPLCKPFSMGRNLFCVYSKKHMLDVPELVEMKKKA NIRSLKEMAMLLRNGSQIVWIAPSGGRDRPDPVTGEWHPARFDTSAVDNMRRLAENSGAPGHIYPLALLCSDIMPPPPKVEKEIGEKRVIAYSGTGLSIG KEIKFNEFASAYENSEQAKEAYAKALYNSISDQYDVLKSAICGKQVADASSPTVSLSQPCDRKARNTRTENSRKRQDTIEHQVPSLAIPSFVTAQILNLF PWFSAVYR

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G32200		ACT1, ATS1	ACYLTRANSFERASE 1, phospholipi...		Lus10000675 [exp]	0	1
AT2G02450	NAC	LOV1, ANAC034, ...	LONG VEGETATIVE PHASE 1, Arabi...		Lus10008419 [exp]	2.2	0.8336
AT1G32200		ACT1, ATS1	ACYLTRANSFERASE 1, phospholipi...		Lus10011062 [exp]	3.3	0.7913
AT4G00730	HD	AHDP, ANL2	ANTHOCYANINLESS 2, ARABIDOPSIS...		Lus10003299 [exp]	4.9	0.8268
AT3G17740			unknown protein		Lus10031899 [exp]	6.5	0.8115
AT4G01030			pentatricopeptide (PPR) repeat...		Lus10009813 [exp]	6.9	0.8332
AT1G01320			Tetratricopeptide repeat (TPR)...		Lus10004009 [exp]	10.7	0.8291
AT1G52950			Nucleic acid-binding, OB-fold-...		Lus10003298 [exp]	11.5	0.7459
AT3G19700		IKU2	HAIKU2, Leucine-rich repeat pr...		Lus10012461 [exp]	11.5	0.7727
AT4G01030			pentatricopeptide (PPR) repeat...		Lus10040917 [exp]	12.5	0.8226
AT4G10940			RING/U-box protein (.1)		Lus10001535 [exp]	13.8	0.7985

Compare expression of checked genes

Lus10000675 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.