Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G17720 297 / 2e-100 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) AT5G46870 283 / 3e-95 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) AT5G16840 237 / 1e-77 BPA1 binding partner of acd11 1 (.1.2.3) AT1G67950 198 / 5e-62 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2), RNA-binding (RRM/RBD/RNP motifs) family protein (.3), RNA-binding (RRM/RBD/RNP motifs) family protein (.4) AT5G32450 178 / 2e-54 RNA binding (RRM/RBD/RNP motifs) family protein (.1) AT1G14340 138 / 4e-39 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) AT3G01210 108 / 8e-28 RNA-binding (RRM/RBD/RNP motifs) family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011063 [exp] 444 / 4e-158 AT4G17720 333 / 2e-114 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Lus10030952 [exp] 350 / 2e-121 AT4G17720 382 / 7e-134 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Lus10040095 [exp] 345 / 2e-119 AT4G17720 379 / 8e-133 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Lus10025743 [exp] 234 / 6e-76 AT4G17720 295 / 4e-100 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Lus10035919 [exp] 186 / 2e-57 AT4G17720 226 / 3e-73 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Lus10010660 [exp] 158 / 6e-46 AT5G32450 352 / 3e-122 RNA binding (RRM/RBD/RNP motifs) family protein (.1) Lus10013651 [exp] 158 / 9e-45 AT5G32450 343 / 5e-117 RNA binding (RRM/RBD/RNP motifs) family protein (.1) Lus10012843 [exp] 145 / 6e-42 AT1G14340 301 / 5e-104 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Lus10030491 [exp] 144 / 3e-41 AT1G14340 300 / 1e-103 RNA-binding (RRM/RBD/RNP motifs) family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G138400 [exp] 307 / 8e-105 AT4G17720 365 / 2e-127 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Potri.003G095400 [exp] 281 / 2e-94 AT4G17720 355 / 9e-124 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Potri.010G103600 [exp] 231 / 2e-74 AT1G67950 280 / 6e-94 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2), RNA-binding (RRM/RBD/RNP motifs) family protein (.3), RNA-binding (RRM/RBD/RNP motifs) family protein (.4) Potri.013G055100 [exp] 175 / 3e-53 AT5G32450 389 / 9e-138 RNA binding (RRM/RBD/RNP motifs) family protein (.1) Potri.019G037600 [exp] 165 / 3e-49 AT5G32450 400 / 2e-142 RNA binding (RRM/RBD/RNP motifs) family protein (.1) Potri.017G081400 [exp] 137 / 9e-39 AT1G14340 229 / 3e-75 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Potri.017G081500 [exp] 132 / 4e-37 AT1G14340 239 / 6e-80 RNA-binding (RRM/RBD/RNP motifs) family protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10000676 pacid=23144028 polypeptide=Lus10000676 locus=Lus10000676.g ID=Lus10000676.BGIv1.0 annot-version=v1.0 ATGTCGCAGGTAAACACAATCAAAGTGAGTAATGTTTCTCTAAAGGCAACCGATAAGGACCTCAAGGAGTTCTTCTCTTTCTCTAAAGGCAACCTTTTAC TTACTATCCCAAATATAACCCGAATCCGATCGAACTCGCCCATTTTATTATGCAGCGACGACCACCACAACTCTCAGGTGGGATACGTTACCTTCAAAGA TTATCAAGGTGCAGAAACTGCAATTCTTCTTTCGGGAGCAACTATAGTTGATCTTGCTGTCACCATATCCTTGGATCCCTACTACAAGCTACCACAATCT GTCCTAGCCGCAATGGAGAATGAGAGCAAGGACCCAGCAGACCCAGACTCGGCGCTACGAAAGGCAGAGGACGTGGTGAGCAGCATGCTGGCAAAGGGAT ACATACTAGGGGAAGATGCTGTGAACAAGGCCAAGGCATTCGACGAGAAGCACCAGCTAACGTCGACAGGGTTGGCTAAGGTGGCGTCCTTCGACAAGAC GATAGGCCTGACGGACAAGATCAGCACCAGCGTGACAGTGATGGGTGACAAAGTCCGGGAAGTGGACCAGAAGTACCAGGTCACTGAGAAGACCAAGTCT GCACTGGCTGTTGCAGAGCAGACGGTCAGCACTGCAGGGTCTAAGATAATGAAGAACCGGTACGTGTTCACCAGCGCTGCCTGGGTGACCGGAGCCTTCA GCAGGGTGGCCAAGGCTGCTGAGGACGTCGGGCAGAAGGCCAAAGAGAAGGCCGCCGAAGGAGAGGAGAGAAAGGAAGTTGTGGATGATGATCGTAGTGA TAAGCAGAAGGAAGCCAAGAAGGAGGAACAGAAAGAGAAGCTCGGAGAGGGAATGAATCAGCAGTTGACTGCTGTTGATCATCCCAAGTCACCTTCTTCC AAGTCTGCTGCACCTATTCAATAA
AA sequence Show only first row Show all	>Lus10000676 pacid=23144028 polypeptide=Lus10000676 locus=Lus10000676.g ID=Lus10000676.BGIv1.0 annot-version=v1.0 MSQVNTIKVSNVSLKATDKDLKEFFSFSKGNLLLTIPNITRIRSNSPILLCSDDHHNSQVGYVTFKDYQGAETAILLSGATIVDLAVTISLDPYYKLPQS VLAAMENESKDPADPDSALRKAEDVVSSMLAKGYILGEDAVNKAKAFDEKHQLTSTGLAKVASFDKTIGLTDKISTSVTVMGDKVREVDQKYQVTEKTKS ALAVAEQTVSTAGSKIMKNRYVFTSAAWVTGAFSRVAKAAEDVGQKAKEKAAEGEERKEVVDDDRSDKQKEAKKEEQKEKLGEGMNQQLTAVDHPKSPSS KSAAPIQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G17720			RNA-binding (RRM/RBD/RNP motif...		Lus10000676 [exp]	0	1
AT1G06520		ATGPAT1, GPAT1	glycerol-3-phosphate acyltrans...		Lus10007344 [exp]	1.4	0.8896
AT3G22600			Bifunctional inhibitor/lipid-t...		Lus10039349 [exp]	9.3	0.8870
AT1G75900		EXL3	GDSL-like Lipase/Acylhydrolase...		Lus10013572 [exp]	10.5	0.8694
AT1G22380		ATUGT85A3	UDP-glucosyl transferase 85A3 ...		Lus10014831 [exp]	10.8	0.8895
AT1G06520		ATGPAT1, GPAT1	glycerol-3-phosphate acyltrans...		Lus10020767 [exp]	12.7	0.8790
AT4G15550		IAGLU	indole-3-acetate beta-D-glucos...		Lus10019989 [exp]	17.9	0.8869
AT3G59140		ATMRP14, ABCC10	ATP-binding cassette C10, mult...		Lus10039320 [exp]	19.5	0.8731
AT5G42020		BIP2, BIP	luminal binding protein, Heat ...		Lus10007778 [exp]	22.6	0.8746
AT2G23910			NAD(P)-binding Rossmann-fold s...		Lus10003780 [exp]	26.4	0.8200
AT1G22380		ATUGT85A3	UDP-glucosyl transferase 85A3 ...		Lus10032220 [exp]	27.3	0.8806

Compare expression of checked genes

Lus10000676 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.