Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G14130 404 / 3e-143 XTR7, XTH15 xyloglucan endotransglycosylase 7, xyloglucan endotransglucosylase/hydrolase 15 (.1) AT3G23730 404 / 4e-143 XTH16 xyloglucan endotransglucosylase/hydrolase 16 (.1) AT4G25810 370 / 6e-130 XTH23, XTR6 xyloglucan endotransglucosylase/hydrolase 23, xyloglucan endotransglycosylase 6 (.1) AT5G57550 370 / 6e-130 XTR3, XTH25, EXGT-A5 xyloglucan endotransglycosylase 3, xyloglucan endotransglucosylase/hydrolase 25 (.1) AT5G57560 362 / 6e-127 XTH22, TCH4 xyloglucan endotransglucosylase/hydrolase 22, Touch 4, Xyloglucan endotransglucosylase/hydrolase family protein (.1) AT4G30270 360 / 3e-126 XTH24, SEN4, BRU1, MERI-5, MERI5B SENESCENCE 4, meristem-5, MERISTEM 5, xyloglucan endotransglucosylase/hydrolase 24 (.1) AT5G57530 348 / 3e-121 AtXTH12, XTH12 xyloglucan endotransglucosylase/hydrolase 12 (.1) AT5G57540 347 / 8e-121 AtXTH13, XTH13 xyloglucan endotransglucosylase/hydrolase 13 (.1) AT2G18800 335 / 7e-116 ATXTH21, XTH21, XTR17 xyloglucan endotransglucosylase/hydrolase 21 (.1) AT4G25820 334 / 7e-116 ATXTH14, XTR9, XTH14 xyloglucan endotransglycosylase 9, xyloglucan endotransglucosylase/hydrolase 14 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021638 [exp] 528 / 0 AT3G23730 413 / 7e-147 xyloglucan endotransglucosylase/hydrolase 16 (.1) Lus10028947 [exp] 412 / 2e-146 AT4G14130 437 / 2e-156 xyloglucan endotransglycosylase 7, xyloglucan endotransglucosylase/hydrolase 15 (.1) Lus10008522 [exp] 406 / 4e-144 AT3G23730 430 / 2e-153 xyloglucan endotransglucosylase/hydrolase 16 (.1) Lus10004723 [exp] 399 / 3e-141 AT3G23730 431 / 1e-153 xyloglucan endotransglucosylase/hydrolase 16 (.1) Lus10010938 [exp] 375 / 4e-132 AT4G14130 386 / 3e-136 xyloglucan endotransglycosylase 7, xyloglucan endotransglucosylase/hydrolase 15 (.1) Lus10031393 [exp] 374 / 2e-131 AT3G23730 388 / 8e-137 xyloglucan endotransglucosylase/hydrolase 16 (.1) Lus10020773 [exp] 374 / 3e-131 AT3G23730 394 / 4e-139 xyloglucan endotransglucosylase/hydrolase 16 (.1) Lus10010939 [exp] 373 / 4e-131 AT3G23730 384 / 2e-135 xyloglucan endotransglucosylase/hydrolase 16 (.1) Lus10007349 [exp] 372 / 1e-130 AT3G23730 394 / 4e-139 xyloglucan endotransglucosylase/hydrolase 16 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G146100 [exp] 423 / 7e-151 AT3G23730 451 / 1e-161 xyloglucan endotransglucosylase/hydrolase 16 (.1) Potri.002G236200 [exp] 411 / 5e-146 AT3G23730 436 / 1e-155 xyloglucan endotransglucosylase/hydrolase 16 (.1) Potri.005G201200 [exp] 399 / 2e-141 AT4G14130 405 / 2e-143 xyloglucan endotransglycosylase 7, xyloglucan endotransglucosylase/hydrolase 15 (.1) Potri.002G060500 [exp] 399 / 3e-141 AT4G14130 424 / 3e-151 xyloglucan endotransglycosylase 7, xyloglucan endotransglucosylase/hydrolase 15 (.1) Potri.005G201250 [exp] 399 / 4e-141 AT4G14130 395 / 2e-139 xyloglucan endotransglycosylase 7, xyloglucan endotransglucosylase/hydrolase 15 (.1) Potri.002G060400 [exp] 387 / 2e-136 AT4G14130 402 / 2e-142 xyloglucan endotransglycosylase 7, xyloglucan endotransglucosylase/hydrolase 15 (.1) Potri.018G095100 [exp] 385 / 9e-136 AT4G25810 420 / 1e-149 xyloglucan endotransglucosylase/hydrolase 23, xyloglucan endotransglycosylase 6 (.1) Potri.011G077320 [exp] 383 / 5e-135 AT3G23730 386 / 7e-136 xyloglucan endotransglucosylase/hydrolase 16 (.1) Potri.018G095200 [exp] 382 / 2e-134 AT4G25810 414 / 3e-147 xyloglucan endotransglucosylase/hydrolase 23, xyloglucan endotransglycosylase 6 (.1) Potri.013G005700 [exp] 381 / 1e-133 AT4G25810 431 / 5e-153 xyloglucan endotransglucosylase/hydrolase 23, xyloglucan endotransglycosylase 6 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0004 [flax] [poplar] Concanavalin PF00722 [flax] [poplar] Glyco_hydro_16 Glycosyl hydrolases family 16 CL0004 [flax] [poplar] Concanavalin PF06955 [flax] [poplar] XET_C Xyloglucan endo-transglycosylase (XET) C-terminus
Representative CDS sequence Show only first row Show all	>Lus10000678 pacid=23144918 polypeptide=Lus10000678 locus=Lus10000678.g ID=Lus10000678.BGIv1.0 annot-version=v1.0 ATGGGTTTGTTCTCTGGTCCATTTGGGTTGCTAGTAGTACTCGTGATTAGTTGTTGTTTGGTAGGAGTTGCACTTGCGGGCAATTTCAACAAGGACTTCG ACTTAACATGGGGAGGGCCACGAGCTAAGATCTCAAATGGTGGTCGGGATTTGTCTCTGTCGCTAGACAATACCTCTGGCTCTGGATTTCAATCCAAGAA GGAGTACCTCTTTGGCAAGATTGACATGCAGCTTAAGCTCATCGCTGGCAACTCTGCTGGCACTGTCACTACTTACTACTTGTCATCTGAAGGGACTACA CACGACGAAATCGACTTCGAATTCCTGGGAAACCTGAGCGGAGACCCGTACATTATCCACACCAACGTATTTAGTCAAGGCAAAGGAAACAGAGAGCAAC AATTCTACTTATGGTTCGACCCGACACAAGACTACCATACTTACTCAGTCATATGGCTCCCACACCACATCGTGTTCTTGGTCGACAACACTCCTATTCG TGTTTTCAAAAACGCTGAGTCCATGGGCGTACCGTTCCCCAAAAGCCAGCCCATGAGGATCCACTCAAGCCTGTGGAATGCAGACGATTGGGCTACCCGT GGAGGCCTGGTGAAGACCGATTGGTCAAAGGCTCCATTCACGGCCTACTATCGTAACTTCAATTCTTTCGAGGTTTCGAAAACGCTGTCACCAAAGTCAT TTTCGGATGGGAATTGGGAGTCGAAGGAGTTGGACGGCAAAGCGAGGAGGAGAGTGAGGTGGGTTCAGAAGAACTACATGATTTACAACTATTGCACAGA CCTTAAGCGCTTCCCCCAAGGTTTTCCTGTCGAGTGTCGATCATGA
AA sequence Show only first row Show all	>Lus10000678 pacid=23144918 polypeptide=Lus10000678 locus=Lus10000678.g ID=Lus10000678.BGIv1.0 annot-version=v1.0 MGLFSGPFGLLVVLVISCCLVGVALAGNFNKDFDLTWGGPRAKISNGGRDLSLSLDNTSGSGFQSKKEYLFGKIDMQLKLIAGNSAGTVTTYYLSSEGTT HDEIDFEFLGNLSGDPYIIHTNVFSQGKGNREQQFYLWFDPTQDYHTYSVIWLPHHIVFLVDNTPIRVFKNAESMGVPFPKSQPMRIHSSLWNADDWATR GGLVKTDWSKAPFTAYYRNFNSFEVSKTLSPKSFSDGNWESKELDGKARRRVRWVQKNYMIYNYCTDLKRFPQGFPVECRS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G23730		XTH16	xyloglucan endotransglucosylas...		Lus10000678 [exp]	0	1
AT1G26930			Galactose oxidase/kelch repeat...		Lus10023608 [exp]	4.6	0.7593
					Lus10040421 [exp]	4.7	0.8287
AT4G39220		ATRER1A	Rer1 family protein (.1)		Lus10002890 [exp]	6.9	0.7383
AT4G00120	bHLH	IND1, GT140, bH...	INDEHISCENT, EMBRYO SAC DEVELO...		Lus10033488 [exp]	8.8	0.6762
AT1G58060			RNA helicase family protein (....		Lus10012694 [exp]	13.5	0.6509
					Lus10008145 [exp]	15.1	0.5328
AT4G05230			Ubiquitin-like superfamily pro...		Lus10007641 [exp]	16.6	0.7766
AT2G34930			disease resistance family prot...		Lus10001034 [exp]	21.5	0.6327
AT1G35467		RALFL5	RALF-like 5 (.1)		Lus10006213 [exp]	22.0	0.6294
AT2G44840	AP2_ERF	ATERF13, EREBP	ethylene-responsive element bi...		Lus10029316 [exp]	24.0	0.7433

Compare expression of checked genes

Lus10000678 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.