Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G03510 75 / 1e-14 C2H2ZnF C2H2-type zinc finger family protein (.1) AT2G28200 67 / 3e-12 C2H2ZnF C2H2-type zinc finger family protein (.1) AT5G04390 67 / 6e-12 C2H2ZnF C2H2-type zinc finger family protein (.1) AT3G49930 65 / 8e-12 C2H2ZnF C2H2 and C2HC zinc fingers superfamily protein (.1) AT3G19580 65 / 2e-11 C2H2ZnF AZF2 zinc-finger protein 2 (.1.2) AT3G60580 62 / 2e-10 C2H2ZnF C2H2-like zinc finger protein (.1) AT1G26610 63 / 3e-10 C2H2ZnF C2H2-like zinc finger protein (.1) AT3G10470 62 / 3e-10 C2H2ZnF C2H2-type zinc finger family protein (.1) AT1G02030 61 / 3e-10 C2H2ZnF C2H2-like zinc finger protein (.1) AT2G17180 60 / 9e-10 C2H2ZnF DAZ1 DUO1-ACTIVATED ZINC FINGER 1, C2H2-like zinc finger protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021637 [exp] 634 / 0 AT1G02030 99 / 8e-23 C2H2-like zinc finger protein (.1) Lus10015740 [exp] 139 / 2e-36 AT1G02030 104 / 3e-25 C2H2-like zinc finger protein (.1) Lus10003463 [exp] 127 / 3e-32 AT1G26610 112 / 2e-28 C2H2-like zinc finger protein (.1) Lus10024763 [exp] 76 / 2e-14 AT1G02030 122 / 9e-31 C2H2-like zinc finger protein (.1) Lus10026654 [exp] 75 / 3e-14 AT1G26610 233 / 1e-71 C2H2-like zinc finger protein (.1) Lus10009775 [exp] 75 / 5e-14 AT1G02030 128 / 5e-33 C2H2-like zinc finger protein (.1) Lus10028173 [exp] 73 / 2e-13 AT1G02040 124 / 4e-32 C2H2-type zinc finger family protein (.1) Lus10021409 [exp] 71 / 3e-13 AT3G10470 157 / 4e-46 C2H2-type zinc finger family protein (.1) Lus10042872 [exp] 71 / 1e-12 AT2G45120 124 / 7e-32 C2H2-like zinc finger protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G143800 [exp] 91 / 1e-19 AT3G60580 199 / 1e-61 C2H2-like zinc finger protein (.1) Potri.004G216900 [exp] 76 / 5e-15 AT2G28200 172 / 4e-52 C2H2-type zinc finger family protein (.1) Potri.017G091800 [exp] 75 / 3e-14 AT5G67450 77 / 9e-16 zinc-finger protein 1 (.1) Potri.014G066200 [exp] 75 / 4e-14 AT1G02040 129 / 1e-33 C2H2-type zinc finger family protein (.1) Potri.002G143600 [exp] 73 / 1e-13 AT1G02040 124 / 1e-31 C2H2-type zinc finger family protein (.1) Potri.008G094500 [exp] 73 / 2e-13 AT1G26610 223 / 3e-67 C2H2-like zinc finger protein (.1) Potri.008G032300 [exp] 69 / 8e-13 AT5G04390 207 / 1e-64 C2H2-type zinc finger family protein (.1) Potri.010G159600 [exp] 71 / 1e-12 AT1G26610 298 / 6e-96 C2H2-like zinc finger protein (.1) Potri.009G004800 [exp] 68 / 3e-12 AT2G28200 182 / 7e-56 C2H2-type zinc finger family protein (.1) Potri.009G166200 [exp] 67 / 4e-12 AT4G35280 258 / 4e-85 DUO1-ACTIVATED ZINC FINGER 2, C2H2-like zinc finger protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10000679 pacid=23144915 polypeptide=Lus10000679 locus=Lus10000679.g ID=Lus10000679.BGIv1.0 annot-version=v1.0 ATGGAGGAAGATTATCAGCTACAGCAGCAGCAGCAGAAGATGAAACATGTGTGCAAATTCTGCAGGAAGAGCTTCCCATGTGGGAGGTCATTGGGGGGAC ACATGAGGTCACATATGATCAATGATGTCTCAGCTCAAACTGATGGAACTCTCATCACAAGAAAGAAGCTCCCTTCTCTCATCCTCACTGCAAATGCTGA AAATGCTTCTGCTTCTGCTCAAATTATTGTTGAGAAACTGTGCAAGGAGTGTGGCAAGGGAGGTTTCCAGTCATGGAAGGCCTTGTTTGACCACATGAAG TTCCACCATTCCTCCTTTGATCAGAAGGCAAAAGAGGAAGATGAAATGGAAGATGATGAGGATGAGGATGAAGATGAGGATTCTTGGGAGAATAGTGGTA GCAATATGAAACAGAAAATGGTGATCATGGATAGCAGCCAATCTGACAATGAGATCATGACTGGGATGACGATGCCTAATCGGAAGAAGAGATCGATGAA TAAGAGACGATCGGCTGCTAATTCTTCGTCGTTCTCAGCTGTTTCTGGGGTTGAAGAACAAGAACAAGAAGAGGTTGCTTTGTGCCTCATGTTGCTCTCT AGAGATGTCACAAACTGGGGTTCTAATTCTGCTCATAAAGATCATAATGGTCCTTTTGCTGCTGCTGAGTCATCTGATAACAATTATGTTTTGTCAGAAT CTCCTCCCAACAGGCTGGATCAGGAAGAGCTAGTAAAAGGTACTATTGTTGTTGTTATGAAATCTGAAATTTCTGTGTCTGAGAATCCAAGAAAAAGTGG TGATGTTGTTAAGAGGAAAAGAAAGCTGAAAGAATGTGAAGATCAATCCTTGGAAGTTTGCAAGGATGGCAACATCAAGTTTGAGTGCAACACTTGCAAC AAGAGCTTCCATTCATATCAGGCATTGGGAGGGCATAGAGCTAGCCACAAGAAGACCAAAGGCTATTCTGCTTCCATACTTGATGAGACCAACAATGCAG AAGAAGAAGAACAAGAAGAAGAAGAAACTGATCAGAAGATGATCATGATGAAATCAGTCAACAATGAAATTCTTGATCAGAACAAGTCCCCTACTCCTCC ATCTCCTCCAGCTGCTGCTGCTGCTGCTATTGCGGCGAATCGAAATGTAGCAAGTGGGTCTGTGGGAAGGAAAAGGGATGTGAACAGAAGTCATGAGTGC CCCATTTGTCTCAAAGTGTTTCCATCAGGACAGGCACTTGGTGGCCACAAGAGGTCTCATTTGGTTGCAACCAATAACAGTAAAGTCGCAGTATTGCCTA CTGCAGAAGTAGTAGTACCAGCAGCAGAAGCAGCAAAGATTCCAGTCATTAAAGATTTCTTGGATCTCAATCTTCCTGCCCCAGTTGATGAAGAAAGTAC CAACAACAACAACAGTAGCATTAATGTGGGGTTCAATCAATGGTGGGCTGGAAACAGCCACAAGCATGAACAACAACAACCACTTGTGGGTTTGATCTCT AACTTATAA
AA sequence Show only first row Show all	>Lus10000679 pacid=23144915 polypeptide=Lus10000679 locus=Lus10000679.g ID=Lus10000679.BGIv1.0 annot-version=v1.0 MEEDYQLQQQQQKMKHVCKFCRKSFPCGRSLGGHMRSHMINDVSAQTDGTLITRKKLPSLILTANAENASASAQIIVEKLCKECGKGGFQSWKALFDHMK FHHSSFDQKAKEEDEMEDDEDEDEDEDSWENSGSNMKQKMVIMDSSQSDNEIMTGMTMPNRKKRSMNKRRSAANSSSFSAVSGVEEQEQEEVALCLMLLS RDVTNWGSNSAHKDHNGPFAAAESSDNNYVLSESPPNRLDQEELVKGTIVVVMKSEISVSENPRKSGDVVKRKRKLKECEDQSLEVCKDGNIKFECNTCN KSFHSYQALGGHRASHKKTKGYSASILDETNNAEEEEQEEEETDQKMIMMKSVNNEILDQNKSPTPPSPPAAAAAAIAANRNVASGSVGRKRDVNRSHEC PICLKVFPSGQALGGHKRSHLVATNNSKVAVLPTAEVVVPAAEAAKIPVIKDFLDLNLPAPVDEESTNNNNSSINVGFNQWWAGNSHKHEQQQPLVGLIS NL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G45120	C2H2ZnF		C2H2-like zinc finger protein ...		Lus10000679 [exp]	0	1
AT1G77140		ATVPS45, VPS45	vacuolar protein sorting 45 (....		Lus10018921 [exp]	1.7	0.9041
AT1G77140		ATVPS45, VPS45	vacuolar protein sorting 45 (....		Lus10028622 [exp]	4.0	0.8843
AT1G02030	C2H2ZnF		C2H2-like zinc finger protein ...		Lus10021637 [exp]	5.5	0.8981
AT4G38040			Exostosin family protein (.1)		Lus10002664 [exp]	8.4	0.8835
AT5G18280		ATAPY2	apyrase 2 (.1.2)		Lus10003270 [exp]	8.6	0.9008
AT4G35300		TMT2	tonoplast monosaccharide trans...		Lus10001385 [exp]	9.0	0.8835
AT1G21660			Chaperone DnaJ-domain superfam...		Lus10028548 [exp]	9.2	0.8762
AT3G16630		ATKINESIN-13A, ...	P-loop containing nucleoside t...		Lus10002876 [exp]	11.3	0.8932
AT2G40280			S-adenosyl-L-methionine-depend...		Lus10007520 [exp]	14.7	0.8669
AT3G09740		ATSYP71, SYP71	syntaxin of plants 71 (.1)		Lus10026495 [exp]	15.0	0.8620

Compare expression of checked genes

Lus10000679 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.