Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G13880 197 / 2e-58 ELM2 domain-containing protein (.1) AT2G03470 193 / 2e-56 MYB ELM2 domain-containing protein (.1.2) AT1G26580 186 / 2e-53 unknown protein AT4G11400 100 / 2e-22 ARID ARID/BRIGHT DNA-binding domain;ELM2 domain protein (.1) AT5G04110 82 / 2e-16 GYRB3 DNA GYRASE B3 (.1) AT2G46040 75 / 2e-14 ARID ARID/BRIGHT DNA-binding domain;ELM2 domain protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021636 [exp] 627 / 0 AT2G03470 188 / 5e-55 ELM2 domain-containing protein (.1.2) Lus10026655 [exp] 197 / 1e-57 AT1G26580 237 / 3e-72 unknown protein Lus10037097 [exp] 193 / 1e-55 AT1G26580 249 / 4e-76 unknown protein Lus10036888 [exp] 190 / 2e-54 AT1G26580 253 / 1e-77 unknown protein Lus10004658 [exp] 183 / 1e-52 AT1G26580 243 / 1e-74 unknown protein Lus10032272 [exp] 105 / 3e-25 AT4G11400 187 / 6e-55 ARID/BRIGHT DNA-binding domain;ELM2 domain protein (.1) Lus10024636 [exp] 105 / 2e-24 AT4G11400 187 / 5e-53 ARID/BRIGHT DNA-binding domain;ELM2 domain protein (.1) Lus10014762 [exp] 92 / 1e-19 AT2G46040 242 / 4e-72 ARID/BRIGHT DNA-binding domain;ELM2 domain protein (.1) Lus10036373 [exp] 89 / 1e-18 AT4G11400 249 / 8e-75 ARID/BRIGHT DNA-binding domain;ELM2 domain protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G118400 [exp] 230 / 2e-70 AT1G26580 219 / 2e-65 unknown protein Potri.017G091900 [exp] 228 / 1e-69 AT1G26580 218 / 2e-65 unknown protein Potri.010G159700 [exp] 200 / 2e-58 AT1G26580 253 / 1e-77 unknown protein Potri.008G094400 [exp] 198 / 2e-57 AT1G26580 280 / 3e-88 unknown protein Potri.001G101800 [exp] 113 / 8e-28 AT4G11400 272 / 1e-86 ARID/BRIGHT DNA-binding domain;ELM2 domain protein (.1) Potri.014G086700 [exp] 115 / 2e-27 AT2G46040 247 / 2e-73 ARID/BRIGHT DNA-binding domain;ELM2 domain protein (.1) Potri.002G161100 [exp] 110 / 8e-26 AT2G46040 221 / 4e-64 ARID/BRIGHT DNA-binding domain;ELM2 domain protein (.1) Potri.003G129800 [exp] 108 / 4e-25 AT4G11400 319 / 7e-101 ARID/BRIGHT DNA-binding domain;ELM2 domain protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10000680 pacid=23144917 polypeptide=Lus10000680 locus=Lus10000680.g ID=Lus10000680.BGIv1.0 annot-version=v1.0 ATGGTTCAAAAACGGAGCATCTGTGATGATGATTTTTACAATTTGTCTTGTAAGCACCCAAAGCATTTTGATCACAACGAACAGCTAGTTTCATTTTCAG AACTTGCTCCTCTAGACGTTTCTTCTCTGTATCCTTCTACTTCAGAGTCTGATGCACGCAATTTGAAATTGGCTGAAGGTGAGCATTACCCCATAGAAAG TAATAGTGGAAGCAGCGAGGGGATATGGTGCTCAACTGACTTAGCTAGAACTCCAGGTACTACCAACAGGGACTTGGAAAATGCTAATCGTTGGAGTGGC CATTCTTACTGGGCTGTAAGCAGCAGTGTTGAAGAAGCTTTCCATTCAGATCCACCTGTTGATGTATCTTCTCCGCCCTGCACAATAAGCTCACATGATG AGGACAAAGATATGTATTCTACTTGGTCTCATTCTCCACAGAAAACTGTTCCAATTGGCCCAGATCATCAAGCTGATATCCCTGAATGTGGTGTAGAAGA ATTTGATAAGGTATCGACAATTACCTGTGTAACCAAAGCTGTTTCTGATGATGATAAGAACGGACCTTCTGGGACTTGTGTCATTCCAATGCCAGAGGTA AAAGTTGGCGAAGAACATGGTATTATCGGCATGGAATGTACCTGCAATGACAAAGGTTCTATCAGATGTGTCAGGCAGCACATTGTTGAAGCAAGAGATA GACTTCGAAACAACATCGGACATGATAAATTTGCCGAGTTGGGGTTCTGTGATATGGGAGAACATGTTGCACAGAGGTGGAGTGAGTTGGAAGAACAGAT GTTCCACGAGGTTGTATTCTCAAATCCTATATCAGTAGGGAGGAACTTTTGGAAATCTTTGTCTATGGTCTTCCCTTCCAGAACAACAGAGGAACTCGTC TGTTACTACTTCAATGTTTTCATGTTGCGGAAGAGAGCTGAACAGAATAGGTGTATCCCACTAAACATCGACAGTGACAATGATGAGTGGGAAGGTGTCG ATGAATCTTTAACTCCAGAGGAAGAGGGTAATTCGGTTGTTGAATCCCCTGAATCTCCAGATAAAGTTGGGACACATGTTTCAGATGAGGTCATTGCCAT GGATACCAAAAAGATTTGTTTTGATTATATTGGCGGAGTTGATGACTTTCCGCACTTGTTTTATGGAGACTATGTTGGTTATTCCAAACCATCACCTTCG TGTGATAAAGAAGTCTATGAAGACTCGTGGAAATCGTCGTCTGATACTGGGCTTTCGTTCCAGGGAACGGTGGAGAAAGATGGTAGCAGGGATGTCAGTT CTTCGACAAATGTAGAGAATAAATGA
AA sequence Show only first row Show all	>Lus10000680 pacid=23144917 polypeptide=Lus10000680 locus=Lus10000680.g ID=Lus10000680.BGIv1.0 annot-version=v1.0 MVQKRSICDDDFYNLSCKHPKHFDHNEQLVSFSELAPLDVSSLYPSTSESDARNLKLAEGEHYPIESNSGSSEGIWCSTDLARTPGTTNRDLENANRWSG HSYWAVSSSVEEAFHSDPPVDVSSPPCTISSHDEDKDMYSTWSHSPQKTVPIGPDHQADIPECGVEEFDKVSTITCVTKAVSDDDKNGPSGTCVIPMPEV KVGEEHGIIGMECTCNDKGSIRCVRQHIVEARDRLRNNIGHDKFAELGFCDMGEHVAQRWSELEEQMFHEVVFSNPISVGRNFWKSLSMVFPSRTTEELV CYYFNVFMLRKRAEQNRCIPLNIDSDNDEWEGVDESLTPEEEGNSVVESPESPDKVGTHVSDEVIAMDTKKICFDYIGGVDDFPHLFYGDYVGYSKPSPS CDKEVYEDSWKSSSDTGLSFQGTVEKDGSRDVSSSTNVENK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G13880			ELM2 domain-containing protein...		Lus10000680 [exp]	0	1
AT1G48840			Plant protein of unknown funct...		Lus10020973 [exp]	2.4	0.8834
AT1G55535			unknown protein		Lus10010333 [exp]	3.9	0.8541
AT2G24640		UBP19	ubiquitin-specific protease 19...		Lus10020116 [exp]	4.7	0.8575
AT3G51390			DHHC-type zinc finger family p...		Lus10028384 [exp]	6.7	0.8437
AT1G05410			Protein of unknown function (D...		Lus10021915 [exp]	8.8	0.8545
AT3G58030			RING/U-box superfamily protein...		Lus10016255 [exp]	11.5	0.8344
AT5G55600			agenet domain-containing prote...		Lus10016606 [exp]	12.0	0.8325
AT1G75850		VPS35B	VPS35 homolog B (.1)		Lus10017272 [exp]	13.9	0.8441
AT5G55600			agenet domain-containing prote...		Lus10007115 [exp]	13.9	0.8541
AT4G11110		SPA2	SPA1-related 2 (.1)		Lus10033942 [exp]	14.1	0.8277

Compare expression of checked genes

Lus10000680 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.