Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G07910 324 / 2e-112 Leucine-rich repeat (LRR) family protein (.1) AT2G30105 137 / 4e-38 unknown protein AT2G17440 87 / 2e-19 PIRL5 plant intracellular ras group-related LRR 5 (.1) AT4G35470 82 / 1e-17 PIRL4, DREB1C plant intracellular ras group-related LRR 4 (.1) AT3G26500 71 / 8e-14 PIRL2 plant intracellular ras group-related LRR 2 (.1) AT3G15410 71 / 9e-14 Leucine-rich repeat (LRR) family protein (.1), Leucine-rich repeat (LRR) family protein (.2) AT1G12970 64 / 2e-11 PIRL3 plant intracellular ras group-related LRR 3 (.1) AT2G19330 61 / 1e-10 PIRL6 plant intracellular ras group-related LRR 6 (.1) AT4G26050 61 / 1e-10 PIRL8 plant intracellular ras group-related LRR 8 (.1) AT3G24240 61 / 2e-10 Leucine-rich repeat receptor-like protein kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021635 [exp] 437 / 3e-157 AT5G07910 360 / 6e-127 Leucine-rich repeat (LRR) family protein (.1) Lus10031861 [exp] 136 / 7e-38 AT2G30105 437 / 7e-154 unknown protein Lus10031291 [exp] 136 / 8e-38 AT2G30105 444 / 2e-156 unknown protein Lus10035976 [exp] 102 / 2e-24 AT4G35470 652 / 0.0 plant intracellular ras group-related LRR 4 (.1) Lus10016684 [exp] 101 / 5e-24 AT1G55325 733 / 0.0 MACCHI-BOU 2, GRAND CENTRAL, RNA polymerase II transcription mediators (.1.2) Lus10000900 [exp] 84 / 4e-18 AT4G35470 409 / 2e-138 plant intracellular ras group-related LRR 4 (.1) Lus10017948 [exp] 69 / 3e-13 AT3G11330 557 / 0.0 plant intracellular ras group-related LRR 9 (.1) Lus10003229 [exp] 68 / 5e-13 AT2G19330 408 / 4e-142 plant intracellular ras group-related LRR 6 (.1) Lus10013689 [exp] 67 / 2e-12 AT3G11330 473 / 3e-165 plant intracellular ras group-related LRR 9 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G048800 [exp] 377 / 3e-133 AT5G07910 341 / 2e-119 Leucine-rich repeat (LRR) family protein (.1) Potri.001G280500 [exp] 132 / 2e-36 AT2G30105 503 / 1e-179 unknown protein Potri.005G098600 [exp] 103 / 5e-25 AT4G35470 672 / 0.0 plant intracellular ras group-related LRR 4 (.1) Potri.007G065000 [exp] 103 / 7e-25 AT4G35470 693 / 0.0 plant intracellular ras group-related LRR 4 (.1) Potri.003G090100 [exp] 84 / 2e-18 AT2G17440 416 / 2e-140 plant intracellular ras group-related LRR 5 (.1) Potri.001G144100 [exp] 77 / 5e-16 AT4G35470 448 / 6e-153 plant intracellular ras group-related LRR 4 (.1) Potri.010G046500 [exp] 74 / 8e-15 AT1G12970 493 / 7e-173 plant intracellular ras group-related LRR 3 (.1) Potri.012G085600 [exp] 70 / 2e-13 AT3G11330 427 / 8e-146 plant intracellular ras group-related LRR 9 (.1) Potri.015G083800 [exp] 68 / 6e-13 AT3G11330 471 / 9e-163 plant intracellular ras group-related LRR 9 (.1) Potri.012G053200 [exp] 67 / 2e-12 AT1G27170 1187 / 0.0 transmembrane receptors;ATP binding (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0022 [flax] [poplar] LRR PF00560 [flax] [poplar] LRR_1 Leucine Rich Repeat
Representative CDS sequence Show only first row Show all	>Lus10000681 pacid=23144920 polypeptide=Lus10000681 locus=Lus10000681.g ID=Lus10000681.BGIv1.0 annot-version=v1.0 ATGGGTTGCTACGCAAGCAAAAACGTCGACACCAAAGCAGCCAGGACTGCTCGCTGGCGATCTACCGGCATTGTTGCCTTGCGTGACTCTAAATTGAAGA CCTTCCCGAATGACATTCTAGATCTTGAGAGAGCTGTGCGAACCCTTGATTTGACACACAACAAAATAGTTGATGTCCCAATGGAGATTAGCAAATTAAT TAATATGCAGCGCCTGATCTTGGCGAACAACTTAATTCAGCGGCTACCAGTGAACTTAGGAAAACTGCAGTCTTTGAAGGTTTTGACACTTGATGGAAAC CAGCTTTCTCTCTTGCCTGATGAATTGGGTCAGCTGGTGAGGCTTGAGCGTTTATCCATTACAGGAAATTTGTTAACGAGTTTGCCGGACACAATTGGAA GCTTGCGCAATTTGTCCCTTTTAAATGTCTCCAACAACAAGTTGAAGACTCTTCCAGAATCAATTGGGAGTTGCTTCTCTCTGGAGGAACTTGAGGCAAA TGGGAATTTTATTGAGGGTCTTACTGCATCCATCTGCAACCTTGTGCACTTGAAGTCACTTAGCCTGAACAAGAACACTATAAATCAGATTCCTCCAAAT ATATTGAAAGACTGCAAGGCTCTGCAGAATATTTCTCTGCATGAGAATCCTATTTCAATGGATCAGTTTCAGCAGATGGAAGGATTTCAAGAATTTGAAG CGAGAAGGAAGCGGAAATTTGACAAGCAAATCGAATCTAACGTGATGATCAGTTCGAAGGGCCTGGACGAGGGTGTGGATTTGTGA
AA sequence Show only first row Show all	>Lus10000681 pacid=23144920 polypeptide=Lus10000681 locus=Lus10000681.g ID=Lus10000681.BGIv1.0 annot-version=v1.0 MGCYASKNVDTKAARTARWRSTGIVALRDSKLKTFPNDILDLERAVRTLDLTHNKIVDVPMEISKLINMQRLILANNLIQRLPVNLGKLQSLKVLTLDGN QLSLLPDELGQLVRLERLSITGNLLTSLPDTIGSLRNLSLLNVSNNKLKTLPESIGSCFSLEELEANGNFIEGLTASICNLVHLKSLSLNKNTINQIPPN ILKDCKALQNISLHENPISMDQFQQMEGFQEFEARRKRKFDKQIESNVMISSKGLDEGVDL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G07910			Leucine-rich repeat (LRR) fami...		Lus10000681 [exp]	0	1
AT2G44420			protein N-terminal asparagine ...		Lus10020880 [exp]	1.0	0.9708
AT3G49640			Aldolase-type TIM barrel famil...		Lus10003486 [exp]	1.4	0.9705
AT1G55340			Protein of unknown function (D...		Lus10013412 [exp]	1.7	0.9670
AT3G01040		GAUT13	galacturonosyltransferase 13 (...		Lus10015379 [exp]	2.0	0.9639
AT5G59210			myosin heavy chain-related (.1...		Lus10016491 [exp]	2.2	0.9610
AT2G01220			Nucleotidylyl transferase supe...		Lus10032989 [exp]	2.6	0.9583
AT3G12300			unknown protein		Lus10005383 [exp]	3.5	0.9600
AT3G54170		ATFIP37	FKBP12 interacting protein 37 ...		Lus10018090 [exp]	3.5	0.9494
AT4G33000		SCABP8, ATCBL10...	SOS3-LIKE CALCIUM BINDING PROT...		Lus10015630 [exp]	4.0	0.9559
AT4G32440			Plant Tudor-like RNA-binding p...		Lus10018749 [exp]	4.2	0.9457

Compare expression of checked genes

Lus10000681 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.