Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G09910 842 / 0 Rhamnogalacturonate lyase family protein (.1) AT1G09890 774 / 0 Rhamnogalacturonate lyase family protein (.1) AT4G24430 693 / 0 Rhamnogalacturonate lyase family protein (.1) AT1G09880 667 / 0 Rhamnogalacturonate lyase family protein (.1) AT2G22620 640 / 0 Rhamnogalacturonate lyase family protein (.1.2) AT4G37950 621 / 0 Rhamnogalacturonate lyase family protein (.1) AT4G38030 597 / 0 Rhamnogalacturonate lyase family protein (.1) AT1G65210 131 / 2e-34 Galactose-binding protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028212 [exp] 819 / 0 AT1G09890 981 / 0.0 Rhamnogalacturonate lyase family protein (.1) Lus10030233 [exp] 640 / 0 AT4G24430 776 / 0.0 Rhamnogalacturonate lyase family protein (.1) Lus10039627 [exp] 635 / 0 AT2G22620 785 / 0.0 Rhamnogalacturonate lyase family protein (.1.2) Lus10004281 [exp] 630 / 0 AT2G22620 818 / 0.0 Rhamnogalacturonate lyase family protein (.1.2) Lus10005979 [exp] 622 / 0 AT1G09880 767 / 0.0 Rhamnogalacturonate lyase family protein (.1) Lus10019231 [exp] 616 / 0 AT2G22620 800 / 0.0 Rhamnogalacturonate lyase family protein (.1.2) Lus10029552 [exp] 575 / 0 AT2G22620 740 / 0.0 Rhamnogalacturonate lyase family protein (.1.2) Lus10012720 [exp] 561 / 0 AT2G22620 706 / 0.0 Rhamnogalacturonate lyase family protein (.1.2) Lus10030232 [exp] 520 / 3e-175 AT1G09880 661 / 0.0 Rhamnogalacturonate lyase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G151500 [exp] 934 / 0 AT1G09910 979 / 0.0 Rhamnogalacturonate lyase family protein (.1) Potri.002G110000 [exp] 841 / 0 AT1G09890 968 / 0.0 Rhamnogalacturonate lyase family protein (.1) Potri.002G110200 [exp] 786 / 0 AT1G09890 892 / 0.0 Rhamnogalacturonate lyase family protein (.1) Potri.002G110300 [exp] 769 / 0 AT4G24430 929 / 0.0 Rhamnogalacturonate lyase family protein (.1) Potri.002G110100 [exp] 711 / 0 AT1G09890 810 / 0.0 Rhamnogalacturonate lyase family protein (.1) Potri.014G004500 [exp] 690 / 0 AT2G22620 807 / 0.0 Rhamnogalacturonate lyase family protein (.1.2) Potri.006G218500 [exp] 681 / 0 AT2G22620 842 / 0.0 Rhamnogalacturonate lyase family protein (.1.2) Potri.011G006200 [exp] 583 / 0 AT1G09910 663 / 0.0 Rhamnogalacturonate lyase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0103 [flax] [poplar] Gal_mutarotase PF06045 [flax] [poplar] Rhamnogal_lyase Rhamnogalacturonate lyase family
Representative CDS sequence Show only first row Show all	>Lus10000684 pacid=23144919 polypeptide=Lus10000684 locus=Lus10000684.g ID=Lus10000684.BGIv1.0 annot-version=v1.0 ATGTTTCATCAACCTGTTCGACTGCATAACCAAGATCACCATGTAGTGATGGATAATGGAATAGTCCAAGTAACACTATCAAATCCAGCAGGCATTATTA CTGGAATCAGATATGGCGGGATTGACAACTTGCTGGAGGTTCTCAACCGTGAAACTAATAGGGGGTACTGGGATCTTCACTGGCATCCACCTGGAGGCAG CGGAATATTTGATGTGATTAGTGGAACACACTTCAGTGTTGTTGTGCAAACCGAGGAACAGGTTGAGATTTCATTCACAAGAATGTGGGAACCCTCTCTT GAGGGTAAGGCCATTCCCTTAAACATAGATAAAAGGTTTATATTGCTACGTGGTTCCTCAGGCTTCTACTCCTATGCCATATATGAGCACATAACAGAAT GGCCTCCTTTCGAGATTGGAGAAACCAGACTCACTTTCAAACTCAGAAAAGACAGGTTCCAATATATGGCAATGGCAGATAACCGAAAAAGAATTATGCC CTTTCCAGAGGACCGGATGTCTGGAAAATGCCAACAACTAGCCTTTCCAGAAGCTGTTCTTCTTACCAATCCCCGGGATCCAAATCTCAAAGGAGAGGTG GATGATAAATACCAGTACTCTTGTGATAACAAAGACAACAGGGTACACGGCTGGATTTCTTTTCAACCGGCCGTGGGGTTCTGGAAAATCACACCAAGTG ACGAGTTCCGAACTGGTGGACCTTTCAAACAGAACCTTACCTCGCATGTTGGTCCTACCACTCTTGCTATGTTTCATAGTACACATTATGCGGGTAAAGA TCTTATGCTTAAGGTTGCTACTGGTGAGCATTGGAAGAAAGTGTTCGGCCCTGTTTTTATCTATCTTAATTCAGTACCCAACGGAAGTGACCCTATGTTT CTATGGGAGGATGCTAAACGACAGATGATGACTGAAGTCCAAAGTTGGCCTTACAGCTTTCCTGCTTCTGTGGATTTCCAAAAACCATATGAAAGGGGGA ATGTATATGGTCGACTATTAGTGCTAGACAGATATATTTTGATGTCTCGTTTCTTGCTTCGGACATTGGTCAAGCTGGCTAAAGATTTCGCTATCATAAT GACTAGGTATATGAGCAAGGAATATATGTTAGCACGTGGTGCTTATGTAGGGCTGGCGTTGCCAGGCGATGCCGGATCATGGCAAAAAGAATGCAAGGGC TATCAATTTTGGACAACAACAGATCATAATGGCTGTTTCTTGATTAGAAATGTTCGCACTGGCAACTATAACCTTTATGCAACTGTGTATGGATTTATTG GAGACTACAGATGTGATGCTGCCATTACCATAAACCCAGGTTGCACCGTTGAGATGGGTGATATTGTTTATGAGCCTCCAAGAGATGGACCGACATTGTG GGAAATAGGCATCCCAGACCGGTCTGCTGCACAGTTTTTTGTTCCTGATCCAGACCCGCAGTTTATCAACAGAATCATCAGTTTTCCTGATAGGGAAAGG CAATTAATTGATGATTATAATTCACTCACTGATTTCTTTCCTGATTGGAGCTTTTTGCAGTATGCCAAAACTATGTTTCCACCCATGTTGTTTACATATA GAGTACTTGGTCTACTGGCAGGTTTAGGCAGTACGGACTGTGGAATAGATATGCAGAGGTGTATCCTGGCTCTGACTTGGTTTATGACGTTGATTGCTGT GACTGCAGCAAAGATTGGTTCTTTGCTCAGGAAGCTTCCCGATGGTACGCACGTTGGAACCACATGGGAAATTAAATTCAGGCTAGACAGAGTTGATCGT GGCGGTACCTACAAACTTCGAGTTGCACTAGCGTCAGCAACTCTCGCTGAGCTGCAGGTACGTGTGAACGATCCAAATTCATCGCGACCTCTGTTTACAA CGGGATTAATAGGAAGGGACAACTCGATAGCGAGACATGGGTGCCACGGGCTGTACTGGCTGTACAATGTGAATGTAGCTGGAGATAAGTTGGTTCAAGG AGAGAACAGATTGTTTTTCAAGCAACCAAGGTGCAACAGTCCTTTCATCGGCCTCTTGTACGACTACATCCGTCTCGAAGCTCCTCCATCTTCCTAA
AA sequence Show only first row Show all	>Lus10000684 pacid=23144919 polypeptide=Lus10000684 locus=Lus10000684.g ID=Lus10000684.BGIv1.0 annot-version=v1.0 MFHQPVRLHNQDHHVVMDNGIVQVTLSNPAGIITGIRYGGIDNLLEVLNRETNRGYWDLHWHPPGGSGIFDVISGTHFSVVVQTEEQVEISFTRMWEPSL EGKAIPLNIDKRFILLRGSSGFYSYAIYEHITEWPPFEIGETRLTFKLRKDRFQYMAMADNRKRIMPFPEDRMSGKCQQLAFPEAVLLTNPRDPNLKGEV DDKYQYSCDNKDNRVHGWISFQPAVGFWKITPSDEFRTGGPFKQNLTSHVGPTTLAMFHSTHYAGKDLMLKVATGEHWKKVFGPVFIYLNSVPNGSDPMF LWEDAKRQMMTEVQSWPYSFPASVDFQKPYERGNVYGRLLVLDRYILMSRFLLRTLVKLAKDFAIIMTRYMSKEYMLARGAYVGLALPGDAGSWQKECKG YQFWTTTDHNGCFLIRNVRTGNYNLYATVYGFIGDYRCDAAITINPGCTVEMGDIVYEPPRDGPTLWEIGIPDRSAAQFFVPDPDPQFINRIISFPDRER QLIDDYNSLTDFFPDWSFLQYAKTMFPPMLFTYRVLGLLAGLGSTDCGIDMQRCILALTWFMTLIAVTAAKIGSLLRKLPDGTHVGTTWEIKFRLDRVDR GGTYKLRVALASATLAELQVRVNDPNSSRPLFTTGLIGRDNSIARHGCHGLYWLYNVNVAGDKLVQGENRLFFKQPRCNSPFIGLLYDYIRLEAPPSS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G09910			Rhamnogalacturonate lyase fami...		Lus10000684 [exp]	0	1
AT3G24840			Sec14p-like phosphatidylinosit...		Lus10025924 [exp]	1.4	0.9175
AT1G55620		CLCF, ATCLC-F, ...	chloride channel F (.1.2)		Lus10032888 [exp]	2.4	0.9146
AT1G55840			Sec14p-like phosphatidylinosit...		Lus10043160 [exp]	3.0	0.8919
AT5G27000		KATD, ATK4	KINESIN-LIKE PROTEIN IN ARABID...		Lus10015212 [exp]	3.3	0.9190
AT2G43240			Nucleotide-sugar transporter f...		Lus10027009 [exp]	4.0	0.9113
AT2G35100		ARAD1	ARABINAN DEFICIENT 1, Exostosi...		Lus10036219 [exp]	5.7	0.8849
AT3G03790			ankyrin repeat family protein ...		Lus10010659 [exp]	6.5	0.8973
AT4G15530		PPDK	pyruvate orthophosphate dikina...		Lus10034005 [exp]	6.9	0.8965
AT4G15530		PPDK	pyruvate orthophosphate dikina...		Lus10012770 [exp]	7.0	0.8966
AT1G79820		SGB1	SUPPRESSOR OF G PROTEIN BETA1,...		Lus10035862 [exp]	7.7	0.8975

Compare expression of checked genes

Lus10000684 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.