Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G31150 264 / 5e-86 endonuclease V family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024534 [exp] 125 / 8e-34 AT4G31150 91 / 3e-22 endonuclease V family protein (.1.2) Lus10013508 [exp] 40 / 0.0008 ND /
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G001000 [exp] 301 / 3e-100 AT4G31150 308 / 2e-105 endonuclease V family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0219 [flax] [poplar] RNase_H PF04493 [flax] [poplar] Endonuclease_5 Endonuclease V
Representative CDS sequence Show only first row Show all	>Lus10000685 pacid=23174245 polypeptide=Lus10000685 locus=Lus10000685.g ID=Lus10000685.BGIv1.0 annot-version=v1.0 ATGGGGTTCGGGAATTTGGAAATTCGGAACGGCCGCTTTCTTGTTCCGAACAACACGGAAGCGATTTACGATCATGAAAGAAGAGCCGAAGAATCGGCAA CGTCGGCCGATATCGAGACGAGGAAATGGATGAAGATTCAAGATATTCTAAAGAAAAGTTTGACCACGACGGATGATTTCAAATGGAGTCCGCCGATAAG CAACCCGTCGACCATGGTTGTCAGCGAAGGCTCAGCCGATCATTTGAGGTTCGTGGCCGGGTTCGATGTTAGCTACTCGAAAAACGATTCGTCAATGGGA TGCGGGGTTCTCGTGGTTTTGGATCTCCCAAGTTTACAAGTTGTATACGAGGACTTTTGCATCGTTGAAAATCCAGTCCCTTATGTATCCGGCTTCCTTG CCTTCAGGGAGGCACCAATATTTTTGCAGTTACTTGAGAAGATGAAGAAGAGTGACAGTAGTTTATACCCTCAGAACTCTGGACATTGTATGGTACCCTT AGGGATGCTGTCTTACTTCTGGCTTTCACATGGCCAGAGCCAGAGTTTCGGCTCAGCTTGCCAAGTAGGCGTTCTGGCTGATCTTCCAACTATTGGCATT GGAAAGAATCTGCACCATGTGGATGGCCTTACCCAATCTGGTGTAAGACAGTTACTTCAAGCTAAAGAGAACAGCAGCAAGGACTTGATTACTTTGAAAG GATTCTCTGGATGCACCTGGGGCGCGGCAATGAGATCTGGCGGTGTGATGAAGCCAATCTTCATCTCAGTCGGGCATCGCATATCCCTGGACACTGCAAT CAACATTGTCAAAATAACTTGCAAGTACCGTGTTCCAGAGCCTGTCCGTCAGGCTGATATAAGATCGAGGCAGCACCTAATAAAGCACCAGACTGGAGTC GTACGAAAATGCAGTTGTGTGAACTTGATCACTGAGGCAACGAGGCGCAGACATCAAGTGGCTTTCACGAGTAAAAAGGAAGTGGTATTATTCACTGTTC ACGGAGATCTTCAACTAGCATCTGAATGCCCCCCCCGGGAGTTAGCACAAAATATCAGCTGCTTCCAAAGAGAGTTTGCACAACCATCGTCTCAACAATC ACATCAGGGTGGGAGTAACCACGGTGGATTGATGGCTACAGCTTCTGCACCCCCGTTTGGCATGAAGACATCACACTCTTCTTCTAGCGATGATAGTGAA TCAAGTGAAAAGCAAAAAGAATCCAATGCTTTGAGTTCCTTTATCGAGGATAGTGACGACGATGATGATAGGGAGGACTAG
AA sequence Show only first row Show all	>Lus10000685 pacid=23174245 polypeptide=Lus10000685 locus=Lus10000685.g ID=Lus10000685.BGIv1.0 annot-version=v1.0 MGFGNLEIRNGRFLVPNNTEAIYDHERRAEESATSADIETRKWMKIQDILKKSLTTTDDFKWSPPISNPSTMVVSEGSADHLRFVAGFDVSYSKNDSSMG CGVLVVLDLPSLQVVYEDFCIVENPVPYVSGFLAFREAPIFLQLLEKMKKSDSSLYPQNSGHCMVPLGMLSYFWLSHGQSQSFGSACQVGVLADLPTIGI GKNLHHVDGLTQSGVRQLLQAKENSSKDLITLKGFSGCTWGAAMRSGGVMKPIFISVGHRISLDTAINIVKITCKYRVPEPVRQADIRSRQHLIKHQTGV VRKCSCVNLITEATRRRHQVAFTSKKEVVLFTVHGDLQLASECPPRELAQNISCFQREFAQPSSQQSHQGGSNHGGLMATASAPPFGMKTSHSSSSDDSE SSEKQKESNALSSFIEDSDDDDDRED

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G31150			endonuclease V family protein ...		Lus10000685 [exp]	0	1
AT1G72050	C2H2ZnF	TFIIIA	transcription factor IIIA (.1....		Lus10015657 [exp]	2.8	0.8849
AT4G12740			HhH-GPD base excision DNA repa...		Lus10043074 [exp]	6.3	0.8820
AT2G39740		HESO1	HEN1 suppressor 1, Nucleotidyl...		Lus10001012 [exp]	6.3	0.8949
AT4G28830			S-adenosyl-L-methionine-depend...		Lus10011107 [exp]	7.3	0.8954
AT1G15030			Protein of unknown function (D...		Lus10033747 [exp]	14.5	0.8645
AT1G33980		ATUPF3, UPF3	Smg-4/UPF3 family protein (.1....		Lus10003510 [exp]	20.2	0.8443
AT4G39910		ATUBP3	ubiquitin-specific protease 3 ...		Lus10014333 [exp]	20.4	0.8789
AT3G24560		RSY3	RASPBERRY 3, Adenine nucleotid...		Lus10023647 [exp]	22.3	0.8809
AT2G42130			Plastid-lipid associated prote...		Lus10016263 [exp]	24.7	0.8807
AT3G24560		RSY3	RASPBERRY 3, Adenine nucleotid...		Lus10034921 [exp]	25.8	0.8640

Compare expression of checked genes

Lus10000685 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.