Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G17930 87 / 3e-20 Aminotransferase-like, plant mobile domain family protein (.1) AT1G48120 70 / 4e-14 hydrolases;protein serine/threonine phosphatases (.1) AT2G25010 70 / 5e-14 Aminotransferase-like, plant mobile domain family protein (.1) AT2G04865 66 / 1e-12 Aminotransferase-like, plant mobile domain family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012087 [exp] 276 / 6e-95 AT1G17930 57 / 4e-09 Aminotransferase-like, plant mobile domain family protein (.1) Lus10027047 [exp] 273 / 6e-90 AT1G17930 119 / 1e-28 Aminotransferase-like, plant mobile domain family protein (.1) Lus10020970 [exp] 251 / 4e-82 AT1G17930 123 / 2e-30 Aminotransferase-like, plant mobile domain family protein (.1) Lus10024265 [exp] 233 / 2e-77 AT1G17930 59 / 9e-10 Aminotransferase-like, plant mobile domain family protein (.1) Lus10003272 [exp] 222 / 2e-74 ND 39 / 0.002 Lus10001981 [exp] 207 / 2e-67 AT1G17930 61 / 2e-10 Aminotransferase-like, plant mobile domain family protein (.1) Lus10043081 [exp] 195 / 3e-64 AT1G17930 64 / 2e-12 Aminotransferase-like, plant mobile domain family protein (.1) Lus10034059 [exp] 189 / 2e-62 AT1G48120 43 / 1e-05 hydrolases;protein serine/threonine phosphatases (.1) Lus10033313 [exp] 192 / 2e-60 AT1G17930 72 / 1e-13 Aminotransferase-like, plant mobile domain family protein (.1)
Poplar homologues Show only best Show top 10	No hit found
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF10536 [flax] [poplar] PMD Plant mobile domain
Representative CDS sequence Show only first row Show all	>Lus10000686 pacid=23174246 polypeptide=Lus10000686 locus=Lus10000686.g ID=Lus10000686.BGIv1.0 annot-version=v1.0 ATGGGTCCGATCAGTGATGTGCCGGAGTATGCTTGGGGTGCTGGTGCGCTAGCCTGGTTGTATCGGGAGTTAGGGAAGGCTAGCAGGGCGGATGCCAGGG CGATGTCAGGGTGTGTGACGTTGCTCCAGTCCTGGATCTACGAGTACTTCCCGAGTGTGAGGCCTCCGAGGACGCTTAGACAGGAGCGTAGGGCAGGAGA GGCTTTAGCTGGTAGATGGGACAGTGCAGAGACACCTACTCGGGGTGCCGGGTTCCTACGACAGAGGTTGGACTACTACCGTCACCTCCTCGATAACATG GATTCCCGTGATGTTTGTTGGCTTCCTTTTGGGCCGCAGCCCGACATTGAGGTCCCGGCCATGACTTACCGTGGTCTCCTCCGTTGCGCCGATGTAGGGG AGTTCTACGATTCTTATCGTCTGCTCCGACAGTTTGGCTACACACAGGTCGTCCCCCCCTCGATTCCTGTGTTGCTGCGGGCCATTAGGCCCAAATCTAT CCCGACATATGGGGTCCATTGGGCCCCGGCTAATGATAGGACTTGGTTGGAGCAGGACTTCATCTGA
AA sequence Show only first row Show all	>Lus10000686 pacid=23174246 polypeptide=Lus10000686 locus=Lus10000686.g ID=Lus10000686.BGIv1.0 annot-version=v1.0 MGPISDVPEYAWGAGALAWLYRELGKASRADARAMSGCVTLLQSWIYEYFPSVRPPRTLRQERRAGEALAGRWDSAETPTRGAGFLRQRLDYYRHLLDNM DSRDVCWLPFGPQPDIEVPAMTYRGLLRCADVGEFYDSYRLLRQFGYTQVVPPSIPVLLRAIRPKSIPTYGVHWAPANDRTWLEQDFI

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G17930			Aminotransferase-like, plant m...		Lus10000686 [exp]	0	1
AT3G48420			Haloacid dehalogenase-like hyd...		Lus10016820 [exp]	2.6	0.9386
AT4G12010			Disease resistance protein (TI...		Lus10042778 [exp]	6.2	0.9026
AT2G41290		SSL2	strictosidine synthase-like 2 ...		Lus10012095 [exp]	8.4	0.9055
AT1G31710			Copper amine oxidase family pr...		Lus10010540 [exp]	8.9	0.9290
					Lus10013654 [exp]	9.2	0.9240
AT5G16080		ATCXE17	carboxyesterase 17 (.1)		Lus10002019 [exp]	11.8	0.9208
AT4G36020		CSDP1	cold shock domain protein 1 (....		Lus10028073 [exp]	15.3	0.9073
AT2G33530		SCPL46	serine carboxypeptidase-like 4...		Lus10040326 [exp]	15.3	0.9204
AT1G17840		AtABCG11, WBC11...	DESPERADO, CUTICULAR DEFECT AN...		Lus10000638 [exp]	16.9	0.8951
AT3G19760		EIF4A-III	eukaryotic initiation factor 4...		Lus10040975 [exp]	17.5	0.9193

Compare expression of checked genes

Lus10000686 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.