Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G65140 439 / 3e-154 TPPJ trehalose-6-phosphate phosphatase J, Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1), Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.2) AT4G39770 412 / 3e-144 TPPH trehalose-6-phosphate phosphatase H, Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) AT5G10100 411 / 2e-143 TPPI trehalose-6-phosphate phosphatase I, Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1), Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.2) AT2G22190 403 / 2e-140 TPPE trehalose-6-phosphate phosphatase E, Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) AT1G35910 388 / 2e-134 TPPD trehalose-6-phosphate phosphatase D, Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) AT1G78090 363 / 1e-124 ATTPPB Arabidopsis thaliana trehalose-6-phosphate phosphatase B, trehalose-6-phosphate phosphatase (.1) AT5G51460 335 / 3e-113 ATTPPA Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1), Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.2), Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.3) AT1G22210 327 / 3e-111 TPPC trehalose-6-phosphate phosphatase C, Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) AT4G22590 303 / 8e-101 TPPG trehalose-6-phosphate phosphatase G, Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) AT4G12430 299 / 2e-99 TPPF trehalose-6-phosphate phosphatase F, Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019666 [exp] 573 / 0 AT5G65140 483 / 9e-173 trehalose-6-phosphate phosphatase J, Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1), Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.2) Lus10027208 [exp] 342 / 2e-116 AT5G51460 515 / 0.0 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1), Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.2), Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.3) Lus10031146 [exp] 333 / 1e-112 AT5G51460 517 / 0.0 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1), Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.2), Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.3) Lus10024607 [exp] 328 / 2e-110 AT4G22590 534 / 0.0 trehalose-6-phosphate phosphatase G, Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) Lus10032244 [exp] 326 / 1e-109 AT4G22590 531 / 0.0 trehalose-6-phosphate phosphatase G, Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) Lus10031723 [exp] 321 / 4e-108 AT5G51460 511 / 0.0 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1), Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.2), Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.3) Lus10038921 [exp] 323 / 1e-107 AT5G51460 488 / 2e-172 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1), Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.2), Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.3) Lus10019010 [exp] 258 / 1e-83 AT1G78090 338 / 6e-115 Arabidopsis thaliana trehalose-6-phosphate phosphatase B, trehalose-6-phosphate phosphatase (.1) Lus10039339 [exp] 256 / 7e-83 AT1G78090 339 / 2e-115 Arabidopsis thaliana trehalose-6-phosphate phosphatase B, trehalose-6-phosphate phosphatase (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G090900 [exp] 504 / 5e-180 AT5G65140 548 / 0.0 trehalose-6-phosphate phosphatase J, Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1), Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.2) Potri.005G077200 [exp] 502 / 4e-179 AT5G65140 545 / 0.0 trehalose-6-phosphate phosphatase J, Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1), Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.2) Potri.002G094500 [exp] 427 / 2e-149 AT5G65140 489 / 3e-174 trehalose-6-phosphate phosphatase J, Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1), Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.2) Potri.012G126100 [exp] 331 / 8e-112 AT5G51460 526 / 0.0 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1), Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.2), Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.3) Potri.015G126900 [exp] 331 / 8e-112 AT5G51460 531 / 0.0 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1), Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.2), Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.3) Potri.001G120500 [exp] 318 / 9e-107 AT4G22590 501 / 2e-178 trehalose-6-phosphate phosphatase G, Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) Potri.003G112400 [exp] 309 / 3e-103 AT4G12430 485 / 3e-172 trehalose-6-phosphate phosphatase F, Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) Potri.012G001000 [exp] 284 / 1e-93 AT1G35910 336 / 4e-114 trehalose-6-phosphate phosphatase D, Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) Potri.015G020300 [exp] 281 / 2e-92 AT1G78090 333 / 4e-113 Arabidopsis thaliana trehalose-6-phosphate phosphatase B, trehalose-6-phosphate phosphatase (.1) Potri.005G166700 [exp] 278 / 3e-92 AT5G65140 362 / 8e-126 trehalose-6-phosphate phosphatase J, Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1), Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0137 [flax] [poplar] HAD PF02358 [flax] [poplar] Trehalose_PPase Trehalose-phosphatase
Representative CDS sequence Show only first row Show all	>Lus10000687 pacid=23158780 polypeptide=Lus10000687 locus=Lus10000687.g ID=Lus10000687.BGIv1.0 annot-version=v1.0 ATGACGAATCAAAATGTGGTAGTATCCGACCCGAAATCCGGGATCAAGCTGCCTCCTCTGGTTCGAATCTCGGATTCGACAATCTTCCCTGCCGCCGCCG CCGTCCAGAAACCACCCACCGCCGGCGGGTATGTCTCGATTTTCACCGCGACGATGGCGCAAATTTCTAGTGGGACGAAGAAGAAGCTCTTGCTGGAGAA TCTCGAAATCAACGGTGGTGGAGGAGCGAGGATCAATTCGTGGGTCGATTCGATGAGGGCTTCCTCCCCAACCCGTCTGAGGTCGAATTCGAAATCTGAA GAGCAGCAGCAGGGTTTTCAATGGAAGGAGCAGTTTCTTCATCTGCCGTCGGCTCTGGAGTCTTTCGACGAGATTATCGAAGCTTCGCAAGGGAAGCAGA TTATGAGAACTACGGTTAGAAGACTGGCTAGATGCTTTCCTACTGCCATAGTTAGTGGAAGATGCAGAGACAAGGTGTACAACTTCGTAAGGTTGGCCGA GCTCTACTATGCCGGAAGCCACGGAATGGACATCAAGGGGCCGAAGAAGGGGTCTAAGTACACGAAAGGAGACGAGCCGGTGATCTGCCAACCAGCAAGT GAGTTTCTCCCCATGATCGACGAAGTGTTCAAGGAGCTGATCGAGAAAACCAAGTCGACACCTGGAGCGAAAGTTGAGAACAACAAGTTTTGCGTTTCGG TCCATTTCCGGTGTGTCGAGGAGAAGAGGTGGGGCGAGGTGGCGGAAGCCGTTAAGTCAGTTTTGAAGAAGTACCCGAAGCTTAGACTCTCGCACGGACG AAAGGTGTTGGAAATCCGACCAACCATCAAGTGGGACAAAGGAAAGGCTCTTGAATTTTTGTTGGAGTCTTTGGGATTTGCCAATTGTAACGATGTTTTT CCCATTTATATCGGAGATGATCGGACAGACGAGGATGCATTTAAGGTATTAAAAGAAAGAGAGCAAGGATTTGGGATTCTGGTGTCCAAAGTTCCAAAGG AAACTAATGCTTCTTATGCCCTACAAGAACCCACTGAGGTTATGGACTTCTTGCAAAGATTGGTAGACTGGAAAAGGCTGGATTTCCAAAGGAAGTCCAG GATGTAG
AA sequence Show only first row Show all	>Lus10000687 pacid=23158780 polypeptide=Lus10000687 locus=Lus10000687.g ID=Lus10000687.BGIv1.0 annot-version=v1.0 MTNQNVVVSDPKSGIKLPPLVRISDSTIFPAAAAVQKPPTAGGYVSIFTATMAQISSGTKKKLLLENLEINGGGGARINSWVDSMRASSPTRLRSNSKSE EQQQGFQWKEQFLHLPSALESFDEIIEASQGKQIMRTTVRRLARCFPTAIVSGRCRDKVYNFVRLAELYYAGSHGMDIKGPKKGSKYTKGDEPVICQPAS EFLPMIDEVFKELIEKTKSTPGAKVENNKFCVSVHFRCVEEKRWGEVAEAVKSVLKKYPKLRLSHGRKVLEIRPTIKWDKGKALEFLLESLGFANCNDVF PIYIGDDRTDEDAFKVLKEREQGFGILVSKVPKETNASYALQEPTEVMDFLQRLVDWKRLDFQRKSRM

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G65140		TPPJ	trehalose-6-phosphate phosphat...		Lus10000687 [exp]	0	1
AT1G79460		ATKS1, ATKS, GA...	GA REQUIRING 2, ARABIDOPSIS TH...		Lus10014673 [exp]	13.3	0.9113
AT2G47710			Adenine nucleotide alpha hydro...		Lus10007043 [exp]	14.8	0.9015
AT5G54960		PDC2	pyruvate decarboxylase-2 (.1)		Lus10027820 [exp]	17.5	0.9076
AT4G26270		PFK3	phosphofructokinase 3 (.1)		Lus10043044 [exp]	19.8	0.9103
AT5G36930			Disease resistance protein (TI...		Lus10029921 [exp]	23.5	0.9047
AT2G38640			Protein of unknown function (D...		Lus10007423 [exp]	24.8	0.8970
AT5G01740			Nuclear transport factor 2 (NT...		Lus10017421 [exp]	38.4	0.8370
AT5G59550			zinc finger (C3HC4-type RING f...		Lus10040278 [exp]	38.7	0.8883
AT2G27450		CPA, ATNLP1, NL...	nitrilase-like protein 1 (.1.2...		Lus10004862 [exp]	38.8	0.8940
AT5G54960		PDC2	pyruvate decarboxylase-2 (.1)		Lus10005048 [exp]	40.7	0.8972

Compare expression of checked genes

Lus10000687 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.