Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G22180 97 / 2e-23 hydroxyproline-rich glycoprotein family protein (.1) AT2G27080 86 / 1e-19 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1), Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.2) AT5G21130 82 / 7e-18 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) AT4G39745 56 / 4e-09 hydroxyproline-rich glycoprotein family protein (.1) AT1G65690 47 / 7e-06 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019667 [exp] 481 / 1e-173 AT2G22180 102 / 3e-25 hydroxyproline-rich glycoprotein family protein (.1) Lus10016800 [exp] 243 / 1e-79 AT2G22180 88 / 4e-20 hydroxyproline-rich glycoprotein family protein (.1) Lus10025548 [exp] 41 / 0.0002 AT2G27080 107 / 1e-29 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1), Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.2) Lus10026762 [exp] 41 / 0.0002 AT2G27080 110 / 5e-31 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1), Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G077100 [exp] 124 / 1e-33 AT2G22180 111 / 8e-29 hydroxyproline-rich glycoprotein family protein (.1) Potri.005G166600 [exp] 99 / 2e-24 AT2G27080 114 / 2e-30 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1), Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.2) Potri.009G158900 [exp] 78 / 2e-16 AT2G27080 259 / 8e-87 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1), Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.2) Potri.004G197600 [exp] 72 / 3e-14 AT2G27080 264 / 8e-89 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1), Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10000688 pacid=23158779 polypeptide=Lus10000688 locus=Lus10000688.g ID=Lus10000688.BGIv1.0 annot-version=v1.0 ATGGAGGAGTGGGCCCCACCAGTTGCGGCCGCGATCCACCCTCTTCCTGCCACCACCACCACCACCGCAGCTGCTGATGCGGTCCCTCCTCCACGAAGAG CATCAAGCAGTAATTACAGTAATATCCCTTCTCAGGCGCCTTATCATCCACGTAAGATCTCCAAAGACGTTCCTTCATTCTCCCTCAAGGTCCAACCAAA CACCTACATCGTCCAGATCCCTAAAGACCAGATCTTTAGCGTCCCGCCACCGGAGCATGGAGAGATCGTGGAGCGATATCGTGAGGAGAAGAACTCAGGC AAGGGCTCTGCTGGCAATGGATGTTGTTCTTCTCGTTGCTTGACCTACACATTATGTTTTTTCATCCTGGTCGGTGCAATTACTGGGATAAGCATCGGTG TTAAGCACGCAATAACGAAGCCAGAACTCCCTACAATCAAGATTAAGAGCTTCAATGTGAAGAACAATGGTGGAAAGTTGGCGCGATTTTATGTCGTGGC GATGGTGAGAAATGATGGGAGGATGCACATTTCTCCCGATGGAAATAGTGACGCCAGCCTGATGTATAAAACGAAGGAGATCGGGTCGGGTAGGTTTCCA GGGTTGAGAATCGGGTCAGGCGAATCAAAATCGATTTCCTTGCGACTCAAGGCATCTAGGAAAAAGAAGTTTCCTAAGGCAGTCAAGGCTAGCATGGCAG ATAAGAAGGGGAAGAAACCAATATCCGTTGAATTGGTTATGAGGATTTCGGTTGTGATGAGTGCATCGGGTATTAAGTCGCAGAGCAAAGAGATCGATGT AAATTGTAAGTTGCGAGTTAGCTCGTTGGGCTCGAATAAAGGCATTATGTCACAAAAATGTCAACTCAATTTTTTGTAG
AA sequence Show only first row Show all	>Lus10000688 pacid=23158779 polypeptide=Lus10000688 locus=Lus10000688.g ID=Lus10000688.BGIv1.0 annot-version=v1.0 MEEWAPPVAAAIHPLPATTTTTAAADAVPPPRRASSSNYSNIPSQAPYHPRKISKDVPSFSLKVQPNTYIVQIPKDQIFSVPPPEHGEIVERYREEKNSG KGSAGNGCCSSRCLTYTLCFFILVGAITGISIGVKHAITKPELPTIKIKSFNVKNNGGKLARFYVVAMVRNDGRMHISPDGNSDASLMYKTKEIGSGRFP GLRIGSGESKSISLRLKASRKKKFPKAVKASMADKKGKKPISVELVMRISVVMSASGIKSQSKEIDVNCKLRVSSLGSNKGIMSQKCQLNFL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G22180			hydroxyproline-rich glycoprote...		Lus10000688 [exp]	0	1
					Lus10003272 [exp]	1.0	1.0000
					Lus10010826 [exp]	1.4	1.0000
					Lus10022108 [exp]	1.7	1.0000
AT2G36780			UDP-Glycosyltransferase superf...		Lus10023893 [exp]	2.0	1.0000
AT3G47090			Leucine-rich repeat protein ki...		Lus10028479 [exp]	2.2	1.0000
					Lus10030783 [exp]	2.4	1.0000
					Lus10036152 [exp]	2.6	1.0000
					Lus10037861 [exp]	2.8	1.0000
AT1G24430			HXXXD-type acyl-transferase fa...		Lus10037952 [exp]	3.0	1.0000
AT1G24020		MLP423	MLP-like protein 423 (.1.2)		Lus10001033 [exp]	5.4	0.8900

Compare expression of checked genes

Lus10000688 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.