Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G13830 75 / 2e-17 J20 DNAJ-like 20 (.1.2) AT4G39960 66 / 4e-13 Molecular chaperone Hsp40/DnaJ family protein (.1) AT2G22360 64 / 2e-12 DNAJ heat shock family protein (.1) AT1G80030 63 / 4e-12 Molecular chaperone Hsp40/DnaJ family protein (.1.2.3) AT3G08910 62 / 4e-12 DNAJ heat shock family protein (.1) AT2G33735 60 / 4e-12 Chaperone DnaJ-domain superfamily protein (.1) AT4G28480 62 / 8e-12 DNAJ heat shock family protein (.1.2) AT2G20560 60 / 3e-11 DNAJ heat shock family protein (.1) AT1G10350 60 / 4e-11 DNAJ heat shock family protein (.1) AT5G59610 57 / 3e-10 Chaperone DnaJ-domain superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019668 [exp] 241 / 3e-83 AT4G13830 82 / 6e-20 DNAJ-like 20 (.1.2) Lus10019669 [exp] 193 / 3e-64 AT4G13830 76 / 9e-18 DNAJ-like 20 (.1.2) Lus10000690 [exp] 189 / 2e-62 AT4G13830 72 / 2e-16 DNAJ-like 20 (.1.2) Lus10002356 [exp] 73 / 2e-16 AT4G13830 144 / 1e-43 DNAJ-like 20 (.1.2) Lus10002355 [exp] 72 / 4e-16 AT4G13830 139 / 2e-41 DNAJ-like 20 (.1.2) Lus10003150 [exp] 71 / 1e-15 AT4G13830 151 / 3e-46 DNAJ-like 20 (.1.2) Lus10003149 [exp] 69 / 8e-15 AT4G13830 141 / 5e-42 DNAJ-like 20 (.1.2) Lus10017263 [exp] 67 / 2e-14 AT4G36040 106 / 2e-29 DnaJ11, Chaperone DnaJ-domain superfamily protein (.1) Lus10016637 [exp] 64 / 8e-13 AT4G13830 187 / 3e-60 DNAJ-like 20 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G088900 [exp] 118 / 3e-34 AT4G13830 91 / 3e-23 DNAJ-like 20 (.1.2) Potri.005G078801 [exp] 114 / 1e-32 AT4G13830 88 / 4e-22 DNAJ-like 20 (.1.2) Potri.017G058400 [exp] 71 / 8e-16 AT4G13830 189 / 3e-61 DNAJ-like 20 (.1.2) Potri.001G319100 [exp] 68 / 1e-14 AT4G13830 157 / 8e-49 DNAJ-like 20 (.1.2) Potri.007G094900 [exp] 66 / 2e-13 AT2G22360 688 / 0.0 DNAJ heat shock family protein (.1) Potri.005G073900 [exp] 66 / 4e-13 AT2G22360 659 / 0.0 DNAJ heat shock family protein (.1) Potri.005G160200 [exp] 65 / 1e-12 AT1G28210 478 / 3e-167 DNAJ heat shock family protein (.1.2) Potri.006G001301 [exp] 61 / 4e-12 AT3G13310 102 / 2e-28 Chaperone DnaJ-domain superfamily protein (.1) Potri.002G020700 [exp] 61 / 6e-12 AT2G17880 108 / 3e-30 Chaperone DnaJ-domain superfamily protein (.1) Potri.006G246700 [exp] 61 / 1e-11 AT5G25530 394 / 1e-137 DNAJ heat shock family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0392 [flax] [poplar] Chaperone-J PF00226 [flax] [poplar] DnaJ DnaJ domain
Representative CDS sequence Show only first row Show all	>Lus10000689 pacid=23158776 polypeptide=Lus10000689 locus=Lus10000689.g ID=Lus10000689.BGIv1.0 annot-version=v1.0 ATGGTAGCACTTGGCCTCAATCTCAACTCCACCCACATCCTCAAACCCTTTCTATCAACCCATCAAACCCACAAAATATCGCATCCCAAAAGTCACAAAA CACTCTCTTGCAAAGCCACCAAAACTAAGACCAATTACTATAAAGTCCTCTCACTCTCATCGGAGAATGTGGGCCCCGACGAGATCAAGAAGGCATACCG GAACATGGCCAGAAAGTACCACCCGGACGTCCGACCGGAAGAAGATTCGACCAGTCGGTTCGTGGAGATAAAGGAGGCTTACGAGACCCTGTCTGACCCG GGGTCTCGTTGGGTATACGACTACGAACTGAGCATGGTTAACTCTATCGGGTTCGGATTTGGGTCTGGGTCGAGTTGGAGTGGCTCGAAGGATGTGTGGA AAATGCAGCTCCATGGCCTGAAAGAGCGGTCCCGGGTCAGGATGGAAAGGAGGAGTTCTTAA
AA sequence Show only first row Show all	>Lus10000689 pacid=23158776 polypeptide=Lus10000689 locus=Lus10000689.g ID=Lus10000689.BGIv1.0 annot-version=v1.0 MVALGLNLNSTHILKPFLSTHQTHKISHPKSHKTLSCKATKTKTNYYKVLSLSSENVGPDEIKKAYRNMARKYHPDVRPEEDSTSRFVEIKEAYETLSDP GSRWVYDYELSMVNSIGFGFGSGSSWSGSKDVWKMQLHGLKERSRVRMERRSS

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G13830		J20	DNAJ-like 20 (.1.2)		Lus10000689 [exp]	0	1
AT1G62310			transcription factor jumonji (...		Lus10004603 [exp]	3.6	0.7691
AT2G35190		NSPN11, ATNPSN1...	novel plant snare 11 (.1)		Lus10003004 [exp]	17.4	0.7177
					Lus10032968 [exp]	20.9	0.7152
					Lus10032814 [exp]	23.7	0.7147
					Lus10024762 [exp]	26.6	0.7147
					Lus10026042 [exp]	29.1	0.7147
AT5G44410			FAD-binding Berberine family p...		Lus10042383 [exp]	31.0	0.6025
AT5G67360		ARA12	Subtilase family protein (.1)		Lus10027891 [exp]	31.4	0.7147
AT3G52970		CYP76G1	"cytochrome P450, family 76, s...		Lus10029930 [exp]	33.6	0.7147
					Lus10006296 [exp]	35.6	0.7147

Compare expression of checked genes

Lus10000689 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.