Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G13830 72 / 2e-16 J20 DNAJ-like 20 (.1.2) AT1G59980 65 / 8e-13 GPS4, ARL2 ,ATDJC39 gravity persistence signal 4, ARG1-like 2 (.1) AT3G62600 64 / 1e-12 ATERDJ3B DNAJ heat shock family protein (.1) AT2G20560 64 / 2e-12 DNAJ heat shock family protein (.1) AT4G39960 64 / 2e-12 Molecular chaperone Hsp40/DnaJ family protein (.1) AT3G08910 63 / 3e-12 DNAJ heat shock family protein (.1) AT4G28480 62 / 8e-12 DNAJ heat shock family protein (.1.2) AT1G10350 61 / 1e-11 DNAJ heat shock family protein (.1) AT1G68370 61 / 2e-11 ARG1 ALTERED RESPONSE TO GRAVITY 1, Chaperone DnaJ-domain superfamily protein (.1) AT1G80030 59 / 5e-11 Molecular chaperone Hsp40/DnaJ family protein (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019669 [exp] 281 / 7e-99 AT4G13830 76 / 9e-18 DNAJ-like 20 (.1.2) Lus10019668 [exp] 229 / 3e-78 AT4G13830 82 / 6e-20 DNAJ-like 20 (.1.2) Lus10000689 [exp] 207 / 6e-70 AT4G13830 83 / 2e-20 DNAJ-like 20 (.1.2) Lus10002356 [exp] 80 / 5e-19 AT4G13830 144 / 1e-43 DNAJ-like 20 (.1.2) Lus10002355 [exp] 75 / 3e-17 AT4G13830 139 / 2e-41 DNAJ-like 20 (.1.2) Lus10003150 [exp] 74 / 7e-17 AT4G13830 151 / 3e-46 DNAJ-like 20 (.1.2) Lus10003149 [exp] 70 / 4e-15 AT4G13830 141 / 5e-42 DNAJ-like 20 (.1.2) Lus10016637 [exp] 69 / 1e-14 AT4G13830 187 / 3e-60 DNAJ-like 20 (.1.2) Lus10022297 [exp] 68 / 5e-14 AT3G62600 522 / 0.0 DNAJ heat shock family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G088900 [exp] 131 / 2e-39 AT4G13830 91 / 3e-23 DNAJ-like 20 (.1.2) Potri.005G078801 [exp] 125 / 2e-37 AT4G13830 88 / 4e-22 DNAJ-like 20 (.1.2) Potri.017G058400 [exp] 68 / 1e-14 AT4G13830 189 / 3e-61 DNAJ-like 20 (.1.2) Potri.001G319100 [exp] 67 / 2e-14 AT4G13830 157 / 8e-49 DNAJ-like 20 (.1.2) Potri.005G073900 [exp] 66 / 4e-13 AT2G22360 659 / 0.0 DNAJ heat shock family protein (.1) Potri.005G160200 [exp] 64 / 1e-12 AT1G28210 478 / 3e-167 DNAJ heat shock family protein (.1.2) Potri.007G094900 [exp] 63 / 3e-12 AT2G22360 688 / 0.0 DNAJ heat shock family protein (.1) Potri.006G001301 [exp] 61 / 3e-12 AT3G13310 102 / 2e-28 Chaperone DnaJ-domain superfamily protein (.1) Potri.006G246700 [exp] 62 / 5e-12 AT5G25530 394 / 1e-137 DNAJ heat shock family protein (.1) Potri.014G122600 [exp] 62 / 7e-12 AT3G62600 565 / 0.0 DNAJ heat shock family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0392 [flax] [poplar] Chaperone-J PF00226 [flax] [poplar] DnaJ DnaJ domain
Representative CDS sequence Show only first row Show all	>Lus10000690 pacid=23158777 polypeptide=Lus10000690 locus=Lus10000690.g ID=Lus10000690.BGIv1.0 annot-version=v1.0 ATGGTTGTACTTAGCCTCAATTTCAACTCCACCCACCTTCCCAAACCCTTTATACTAACTCATCAAACCCACAAAAGATTCAATCCCAACACAATCTCTT GCCAAGCCACCAAGACCAATTACTATCAAGTCCTCTCACTCTCATCGGAGAACGTGGGCCCCGACGAGATCAAGAAGGCATATCGTAACATGGCGCTAAC ATACCACCCTGATGTCCGACCTGGAGAGGATTCGACCCGTCTGTTCGTGGAGATCCGTGAGGCTTACGAGATCCTGTCCGACCCGGAGTCTCGTAGGGTT TACGACTACGAGCTAAGCATGGTCAACTCAATCGGGACTGGGTTCGAATCTGGGTTGAGTCGGGGTGGCTCCAAGGATGTGTGGGAAATGCAGCTTGATG GGTTGAGAGAGCGATCCCGGGCCAGGATGGAAAGGAAGAGTACTTAA
AA sequence Show only first row Show all	>Lus10000690 pacid=23158777 polypeptide=Lus10000690 locus=Lus10000690.g ID=Lus10000690.BGIv1.0 annot-version=v1.0 MVVLSLNFNSTHLPKPFILTHQTHKRFNPNTISCQATKTNYYQVLSLSSENVGPDEIKKAYRNMALTYHPDVRPGEDSTRLFVEIREAYEILSDPESRRV YDYELSMVNSIGTGFESGLSRGGSKDVWEMQLDGLRERSRARMERKST

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G13830		J20	DNAJ-like 20 (.1.2)		Lus10000690 [exp]	0	1
AT5G56460			Protein kinase superfamily pro...		Lus10010319 [exp]	3.2	0.8252
AT5G15900		TBL19	TRICHOME BIREFRINGENCE-LIKE 19...		Lus10003061 [exp]	6.3	0.8246
AT2G39220		PLP6, PLAIIB ,P...	PATATIN-like protein 6 (.1)		Lus10036212 [exp]	9.2	0.7821
AT1G33760	AP2_ERF		Integrase-type DNA-binding sup...		Lus10002953 [exp]	11.0	0.7926
AT3G18440		ATALMT9	aluminum-activated malate tran...		Lus10039925 [exp]	16.0	0.7871
AT5G15740		RRT1	O-fucosyltransferase family pr...		Lus10013503 [exp]	17.1	0.7821
AT1G29050		TBL38	TRICHOME BIREFRINGENCE-LIKE 38...		Lus10019774 [exp]	17.9	0.8060
AT2G18060	NAC	ANAC037, VND1	Arabidopsis NAC domain contain...		Lus10041822 [exp]	20.2	0.7704
AT5G28840		GME	"GDP-D-mannose 3',5'-epimerase...		Lus10020247 [exp]	21.4	0.7772
AT1G33760	AP2_ERF		Integrase-type DNA-binding sup...		Lus10003513 [exp]	21.5	0.7662

Compare expression of checked genes

Lus10000690 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.