Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G19900 231 / 4e-70 PRLI-interacting factor, putative (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019670 [exp] 592 / 0 AT5G19900 313 / 2e-101 PRLI-interacting factor, putative (.1) Lus10000189 [exp] 402 / 7e-140 AT5G19900 179 / 5e-53 PRLI-interacting factor, putative (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G011800 [exp] 265 / 1e-84 AT5G19900 281 / 2e-90 PRLI-interacting factor, putative (.1) Potri.003G214300 [exp] 263 / 1e-82 AT5G19900 294 / 3e-94 PRLI-interacting factor, putative (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10000691 pacid=23158782 polypeptide=Lus10000691 locus=Lus10000691.g ID=Lus10000691.BGIv1.0 annot-version=v1.0 ATGATGAATCCACTCCCGTCTGGTCCGCCTCCTCCTCCGTCGGTTTTGATGAACACGGTCCAGTCACAAATGATGAATGCTGGAAACCAGGCTCAGATGC TGAGCGGGCATAGTCAAGCCATGATCCAGCAGCCGATGATGATGGCGGCGATGAATAATCAGAGAGTGTACAAGCCATGGATGCAGCAGAACCAGCTGAA CCAGAACCAGAACCAGCATCCTCCTGGAAAGTTTGGTTACTTTGTGCCGTCCAAGCCCAGGACGAATAACAACAACAACAATAACAATTGGAAGGGTAAG AATAAGGATAGAAGAATGGGGAACAATATTAATAAGCTCAACACCGGGGGCCTTGGCGGCCCCGGTGGAGGAGTCGGAGTCGGCGGCGGTTTGATAACCG GTTCCAGCGCTGGTATTGGTGGCGGCGGCGGCATCGGCGGCTACATGCCGCCGAGTTTGAATGAGTTGCAAAACCAGAACAGGATGAAAACTCAGAAGCA TTACCACCATTCCAAGAAGAAGTACAACAATCGTTATGCTCCTTATGCTCCTAGGAATAGTACCTCTTTCATTATCCGTGCTAAGAAATCAGGCGGGATT GCTTCCTTGGTGTCTCCTTGTCCTGTGACTCCAGCAGTGCTGCCGACTCCTGATATCCATATCCAACCGATGGAGGTGCTTGGTGATGTGGCTAAGGAGG AATGGGGGGTTGATGGTTATGGATCGATGAAGGGTTTGATTAGGTTGAGGTCTCCTGGACATGAAATGGAAGGAGGGAACGATGAGGATGAAGATGACGA GAGTAGTGGGTCGAGTGAGAGTGATGTTGAGGAGCATGTGGAGGTGGAGAGGAGGTTGGACCACGATTTGAGTAGGTTTGAGATGATTTATCCGAGTAAT GCAGTAGGAGGGGAGTATAGTTTCAATAATGTGTTAGAGAACAGGGTAGATGATCAGGATACGCACATTGCACATTTAGAGGAAGAGAATTTGACTCTGA AGGAGAGGCTTTTTTTGGTGGAGACCGAGTTGGACGATCTTAGGAGGAGGTTGCTGCTCTTGGAGAGGCAGCAGAATGGCAGAGGAGGTATGGAGGAAGT TAACGAAGGGATTGTCGAAAATGTGTCTGAGAATGATATGAATGAGAACGAAAGCCATGGTGAGTCAGATGGTGCTGGGGACAGTAAGATCGATGTGAAC AAAGAACACTCAAATGAGGATAGTGGAAATGTGAACCATGGAGATGATGTTAAGCTAGAAAGCAATGGCATTTCTATTCCAGAGTTTGCACATAACGATG AAGATGTCGAAAAGAAGCAGCTCAAGTTTGATGCTTTAGTGGCTAGCAAGGAAGAACCAAGGATTAATGTGATGCCAGAAGAGGTAACTGGTAAAAGAGT GTTGCAAATGAAGATGTCATAG
AA sequence Show only first row Show all	>Lus10000691 pacid=23158782 polypeptide=Lus10000691 locus=Lus10000691.g ID=Lus10000691.BGIv1.0 annot-version=v1.0 MMNPLPSGPPPPPSVLMNTVQSQMMNAGNQAQMLSGHSQAMIQQPMMMAAMNNQRVYKPWMQQNQLNQNQNQHPPGKFGYFVPSKPRTNNNNNNNNWKGK NKDRRMGNNINKLNTGGLGGPGGGVGVGGGLITGSSAGIGGGGGIGGYMPPSLNELQNQNRMKTQKHYHHSKKKYNNRYAPYAPRNSTSFIIRAKKSGGI ASLVSPCPVTPAVLPTPDIHIQPMEVLGDVAKEEWGVDGYGSMKGLIRLRSPGHEMEGGNDEDEDDESSGSSESDVEEHVEVERRLDHDLSRFEMIYPSN AVGGEYSFNNVLENRVDDQDTHIAHLEEENLTLKERLFLVETELDDLRRRLLLLERQQNGRGGMEEVNEGIVENVSENDMNENESHGESDGAGDSKIDVN KEHSNEDSGNVNHGDDVKLESNGISIPEFAHNDEDVEKKQLKFDALVASKEEPRINVMPEEVTGKRVLQMKMS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G19900			PRLI-interacting factor, putat...		Lus10000691 [exp]	0	1
AT5G19900			PRLI-interacting factor, putat...		Lus10000189 [exp]	1.4	0.9226
AT5G19900			PRLI-interacting factor, putat...		Lus10019670 [exp]	2.0	0.9099
AT1G18190		GC2	golgin candidate 2 (.1)		Lus10031344 [exp]	2.4	0.8973
AT3G24490	Trihelix		Alcohol dehydrogenase transcri...		Lus10017725 [exp]	9.7	0.8378
AT5G50380		ATEXO70F1	exocyst subunit exo70 family p...		Lus10022459 [exp]	11.0	0.8405
AT2G36900		ATMEMB11, MEMB1...	membrin 11 (.1.2)		Lus10005690 [exp]	17.3	0.8316
AT3G57340			Heat shock protein DnaJ, N-ter...		Lus10019421 [exp]	21.0	0.8347
AT4G28990			RNA-binding protein-related (....		Lus10023657 [exp]	23.7	0.7664
AT1G25682			Family of unknown function (DU...		Lus10041495 [exp]	26.7	0.8332
AT5G19430			RING/U-box superfamily protein...		Lus10009695 [exp]	31.2	0.7987

Compare expression of checked genes

Lus10000691 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.