Plant FIBer expression Database

Lus10000692 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT2G22240 944 / 0 ATIPS2, ATMIPS2 MYO-INOSITOL-1-PHOSTPATE SYNTHASE 2, INOSITOL 3-PHOSPHATE SYNTHASE 2, myo-inositol-1-phosphate synthase 2 (.1.2)
AT4G39800 932 / 0 ATIPS1, ATMIPS1, MI-1-P SYNTHASE, MI-1-PSYNTHASE D-myo-Inositol 3-Phosphate Synthase 1, INOSITOL 3-PHOSPHATE SYNTHASE 1, myo-inositol-1-phosphate synthase 1 (.1)
AT5G10170 931 / 0 ATMIPS3 MYO-INOSITOL-1-PHOSTPATE SYNTHASE 3, myo-inositol-1-phosphate synthase 3 (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10019671
[exp]
801 / 0 AT2G22240 780 / 0.0 MYO-INOSITOL-1-PHOSTPATE SYNTHASE 2, INOSITOL 3-PHOSPHATE SYNTHASE 2, myo-inositol-1-phosphate synthase 2 (.1.2)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.005G078700
[exp]
962 / 0 AT5G10170 976 / 0.0 MYO-INOSITOL-1-PHOSTPATE SYNTHASE 3, myo-inositol-1-phosphate synthase 3 (.1)
Potri.007G089000
[exp]
957 / 0 AT2G22240 975 / 0.0 MYO-INOSITOL-1-PHOSTPATE SYNTHASE 2, INOSITOL 3-PHOSPHATE SYNTHASE 2, myo-inositol-1-phosphate synthase 2 (.1.2)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0139 GADPH_aa-bio_dh PF01658 Inos-1-P_synth Myo-inositol-1-phosphate synthase
CL0063 NADP_Rossmann PF07994 NAD_binding_5 Myo-inositol-1-phosphate synthase
Representative CDS sequence
>Lus10000692 pacid=23158778 polypeptide=Lus10000692 locus=Lus10000692.g ID=Lus10000692.BGIv1.0 annot-version=v1.0
ATGTTCATTGAGAAGTTTCAGGTTGAGTCTCCGAATGTGAAGTACACCGAGACTGAGATACAGTCCGTGTACAACTACGAGACCACTGAGCTTGTTCATG
AGAACCGTAACGGCTCTTACCAGTGGGTCGTTAAGCCCAAGTCCGTGAAATACGAGTTCAAAACCGATGTTCAAGTCCCCAAACTCGGGGTTTTGCTCGT
TGGATGGGGTGGAAACAACGGCTCAACCCTCACTGGTGGTGTCATTGCAAACCGAGAAGGGATTTCGTGGGCGACCAAGGATAAGGTGCAGCAAGCAAAC
TACTTTGGGTCACTCACCCAAGCATCAGCTATCCGAGTTGGGTCTTACAATGGAGAGGAGATTTATGCTCCTTTCAAGAGCCTCCTCCCTATGGTGAACC
CAGATGAGATAGTGTTTGGGGGATGGGACATAAGCGACATGAACTTGGCAGATGCCATGGCAAGGGCAAGAGTGTTGGACATTGATCTGCAGAAGCAGCT
GAGGCCTTACATGGAGTCCATGGTGCCACTCCCAGGTATCTACGACCCTGATTTCATCGCTGCTAACCAAGACTCCCGTGCCAACAACGTCATCAAGGGC
ACCAAGAAGGAGCAAGTTCAGCAAGTCATCAAGGACATCAGGGAGTTTAAGGAGAAGACCAAGGTGGACAAGGTGGTTGTGCTGTGGACTGCCAACACAG
AGAGGTACAGTAACATTGTTGTGGGGCTTAACGACACCACAGAGAACCTCCTTGCTGCTGTAGACAGGAACGAGTCCGAGATCTCTCCGTCTACTCTCTA
TGCATTGGCTTGCATCATGGAGAATATCCCTTTCATCAACGGAAGCCCACAGAATACTTTCGTTCCAGGACTTATTGACTTGGCCATCCAGAGGAACAGT
TTAATCGGTGGTGATGACTTCAAGAGTGGTCAGACCAAGATGAAATCAGTCCTTGTTGATTTCCTTGTTGGTGCTGGTATCAAGCCAACATCAATTGTAA
GCTACAATCACCTTGGAAACAACGATGGAATGAACCTCTCGGCTCCACAGACATTCAGGTCCAAGGAGATCTCCAAGAGCAACGTTGTTGATGATATGGT
TTCCAGCAATGCCATCCTATATGAGCCTGGTGAACACCCTGACCATGTTGTGGTCATCAAGTATGTGCCGTATGTAGCAGACAGCAAGAGAGCCATGGAT
GAGTACACTTCAGAGATCTTCCTTGGAGGGACTAATACAATTGTGATGCACAACACCTGTGAAGATTCCCTCTTGGCTGCGCCAATTATCCTGGATTTGG
TCCTTCTTGCTGAGCTCAGCACTAGGATTCAGCTCAAAGCTGAAGGAGAGGGAAAGTTCCACTCTTTCCACCCTGTTGCTACCATTCTCAGTTACCTTAC
CAAGGCTCCTCTGGTGCCACCAGGGACTCCAGTGGTGAATGCACTGTCAAAGCAGAGGGCAATGCTGGAGAACATCATGAGAGCTTGTGTTGGACTGGCA
CCTGAGAACAACATGATCTTGGAATACAAGTGA
AA sequence
>Lus10000692 pacid=23158778 polypeptide=Lus10000692 locus=Lus10000692.g ID=Lus10000692.BGIv1.0 annot-version=v1.0
MFIEKFQVESPNVKYTETEIQSVYNYETTELVHENRNGSYQWVVKPKSVKYEFKTDVQVPKLGVLLVGWGGNNGSTLTGGVIANREGISWATKDKVQQAN
YFGSLTQASAIRVGSYNGEEIYAPFKSLLPMVNPDEIVFGGWDISDMNLADAMARARVLDIDLQKQLRPYMESMVPLPGIYDPDFIAANQDSRANNVIKG
TKKEQVQQVIKDIREFKEKTKVDKVVVLWTANTERYSNIVVGLNDTTENLLAAVDRNESEISPSTLYALACIMENIPFINGSPQNTFVPGLIDLAIQRNS
LIGGDDFKSGQTKMKSVLVDFLVGAGIKPTSIVSYNHLGNNDGMNLSAPQTFRSKEISKSNVVDDMVSSNAILYEPGEHPDHVVVIKYVPYVADSKRAMD
EYTSEIFLGGTNTIVMHNTCEDSLLAAPIILDLVLLAELSTRIQLKAEGEGKFHSFHPVATILSYLTKAPLVPPGTPVVNALSKQRAMLENIMRACVGLA
PENNMILEYK

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT2G22240 ATIPS2, ATMIPS2 MYO-INOSITOL-1-PHOSTPATE SYNTH... Lus10000692
[exp]
0 1
AT2G22240 ATIPS2, ATMIPS2 MYO-INOSITOL-1-PHOSTPATE SYNTH... Lus10019671
[exp]
1.0 0.9224
AT1G32900 GBSS1 granule bound starch synthase ... Lus10033245
[exp]
3.5 0.8950
AT5G15450 AtCLPB3, APG6, ... CASEIN LYTIC PROTEINASE B-P, A... Lus10013191
[exp]
4.6 0.8630
AT1G68570 Major facilitator superfamily ... Lus10041466
[exp]
8.0 0.8617
AT4G28570 Long-chain fatty alcohol dehyd... Lus10022903
[exp]
8.7 0.8492
AT5G13170 SAG29, SWEET15,... senescence-associated gene 29 ... Lus10000310
[exp]
9.2 0.8488
AT1G70300 KUP6 K+ uptake permease 6, K+ uptak... Lus10030857
[exp]
16.6 0.7562
AT3G25180 CYP82G1 cytochrome P450, family 82, su... Lus10038203
[exp]
18.2 0.8090
AT3G01060 unknown protein Lus10030700
[exp]
18.7 0.8125
AT3G48610 NPC6 non-specific phospholipase C6 ... Lus10025726
[exp]
18.8 0.8216

Lus10000692 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.